Gene Pmen_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3000 
Symbol 
ID5107481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3322286 
End bp3322603 
Gene Length318 bp 
Protein Length105 aa 
Translation table11 
GC content64% 
IMG OID640504258 
Productprotein of unknown function DUF883, ElaB 
Protein accessionYP_001188487 
Protein GI146308022 
COG category[S] Function unknown 
COG ID[COG4575] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.876855 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0000209502 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAAACA AAGCCGCTAC TCAGAGCACC AAGGACGCCC TGCTGGATGA ATTCCAGGCC 
CTGGTCAGCG ACACGGAGAA GCTCCTGCAT CATTCCGCCA GCCTCGCAGG CGAACAGGCT
GAAGCGCTGC GTGACGACAT TCGCAGCAGC CTGGGCCGGG CCCGCGAAAC CCTGCACAAC
GCCGAGGCCA GCCTGCGCGA GCAGGGCAAG ATCGCCGTCG ATGCCACCGA GGAATATGTG
CACAAGCATC CGTGGCAGGC ACTTGGTCTG TCGGCCGCCA TCGGCCTGGT GCTCGGCCTG
CTGATCAGCC GCCGTTGA
 
Protein sequence
MQNKAATQST KDALLDEFQA LVSDTEKLLH HSASLAGEQA EALRDDIRSS LGRARETLHN 
AEASLREQGK IAVDATEEYV HKHPWQALGL SAAIGLVLGL LISRR