Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2988 |
Symbol | |
ID | 5107469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3311595 |
End bp | 3312812 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640504246 |
Product | tRNA-processing RNAse BN |
Protein accession | YP_001188475 |
Protein GI | 146308010 |
COG category | [S] Function unknown |
COG ID | [COG1295] Predicted membrane protein |
TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0115566 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCGTC GTCTGAAGGA CTGGCTGGGG TTCTGGCTGA GTCTGTATCA GCGTTTTATC GAGAATCGCG GCGCGGGTAA CGCCGCGGCG CTGACCTATA CCACCCTGTT CGCGGTGGTA CCGATGATGA CCGTGACCTT TGCCATGCTC TCGGCGATTC CGGCGTTCCA GGGCGTCGGC GAAGAGATCC AGGGGTTCAT CTTCAATAAC TTCGTGCCTT CTACCGGCGA GACGGTGCAG GAGTACCTGC GCGAATTCAC CGCCCAGGCG CGACAGCTGA CCTGGTTCGG CGTGGGCCTG CTGGCGGTCA CTGCCTTCCT CATGCTGGTG ACCATCGAGA AGACCTTCAA CGTGATCTGG CGGGTGCGTC AGCCGCGCCG TGGCATGTCC AGCTTCCTGC TCTACTGGGC GATTCTCAGC CTGGGGCCGC TGCTGCTCGG CGCGGGGTTT GCGGTCAGCA CCTATATCGC TTCGCTGTCG CTGATTTCCG GGCCGGACGC CGTGGTCGGG GCGAAGACGC TGCTGGCGTT CACGCCGCTG CTGTCGAGCA TCGCGGCCTT CACCCTGCTT TATGCGGCCG TGCCCAACAC CCGTGTGCCG CTGCGTCACG CCCTGCTTGG CGGCCTGTTC AGCGCCATCC TGTTCGAGAT CGCCAAGGCG CTGTTCGGGC TGTATGTCCG GCTGTTCCCG GGCTATCACC TGATCTATGG CGCCTTCGCC ACGGTGCCGC TGTTTCTGGT GTGGATCTAC CTGTCGTGGC TGATCGTGCT GCTCGGTGCC GAGCTGGTCT ATGGCCTGTC GCAGCCGCGG CGTTGGCGCC GGCAGCCGTT GCCGCGGGCC TTGATCCTGC TGGTGGTGCT GCGTCTGTTG CTGGCGCGCC AGCAGAAGGG CGAGGCCCTG CATTACGCGG AGATGCAGCG TGGCGGCTGG AGCCTGCCGG AAGACGAGTG GAGCGAGGTA CTGGACTTTC TCGAGCGCGA GCATCTGGCC TGTCGTGCCA GCGGCGGAGG CTGGGTGCTG TGCCGCGATC TGCACAACTT CAGCCTGCAT CAGCTGCTCG AGTGCAGTCC CTGGCCGCTG CCCAATCTCT CGCAGTTGCC GGCGCAGCTG GACGAACCCT GGTATCCGGC GCTGCGTCAG GCGCTGGAGC GCTTGCAGAA TGAACGCAAG GAGCAGTTCG GCGTGAGCCT GGCGACCTGG CTGTCGGGTC CTGGCTGA
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Protein sequence | MHRRLKDWLG FWLSLYQRFI ENRGAGNAAA LTYTTLFAVV PMMTVTFAML SAIPAFQGVG EEIQGFIFNN FVPSTGETVQ EYLREFTAQA RQLTWFGVGL LAVTAFLMLV TIEKTFNVIW RVRQPRRGMS SFLLYWAILS LGPLLLGAGF AVSTYIASLS LISGPDAVVG AKTLLAFTPL LSSIAAFTLL YAAVPNTRVP LRHALLGGLF SAILFEIAKA LFGLYVRLFP GYHLIYGAFA TVPLFLVWIY LSWLIVLLGA ELVYGLSQPR RWRRQPLPRA LILLVVLRLL LARQQKGEAL HYAEMQRGGW SLPEDEWSEV LDFLEREHLA CRASGGGWVL CRDLHNFSLH QLLECSPWPL PNLSQLPAQL DEPWYPALRQ ALERLQNERK EQFGVSLATW LSGPG
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