Gene Pmen_2988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2988 
Symbol 
ID5107469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3311595 
End bp3312812 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content65% 
IMG OID640504246 
ProducttRNA-processing RNAse BN 
Protein accessionYP_001188475 
Protein GI146308010 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0115566 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCGTC GTCTGAAGGA CTGGCTGGGG TTCTGGCTGA GTCTGTATCA GCGTTTTATC 
GAGAATCGCG GCGCGGGTAA CGCCGCGGCG CTGACCTATA CCACCCTGTT CGCGGTGGTA
CCGATGATGA CCGTGACCTT TGCCATGCTC TCGGCGATTC CGGCGTTCCA GGGCGTCGGC
GAAGAGATCC AGGGGTTCAT CTTCAATAAC TTCGTGCCTT CTACCGGCGA GACGGTGCAG
GAGTACCTGC GCGAATTCAC CGCCCAGGCG CGACAGCTGA CCTGGTTCGG CGTGGGCCTG
CTGGCGGTCA CTGCCTTCCT CATGCTGGTG ACCATCGAGA AGACCTTCAA CGTGATCTGG
CGGGTGCGTC AGCCGCGCCG TGGCATGTCC AGCTTCCTGC TCTACTGGGC GATTCTCAGC
CTGGGGCCGC TGCTGCTCGG CGCGGGGTTT GCGGTCAGCA CCTATATCGC TTCGCTGTCG
CTGATTTCCG GGCCGGACGC CGTGGTCGGG GCGAAGACGC TGCTGGCGTT CACGCCGCTG
CTGTCGAGCA TCGCGGCCTT CACCCTGCTT TATGCGGCCG TGCCCAACAC CCGTGTGCCG
CTGCGTCACG CCCTGCTTGG CGGCCTGTTC AGCGCCATCC TGTTCGAGAT CGCCAAGGCG
CTGTTCGGGC TGTATGTCCG GCTGTTCCCG GGCTATCACC TGATCTATGG CGCCTTCGCC
ACGGTGCCGC TGTTTCTGGT GTGGATCTAC CTGTCGTGGC TGATCGTGCT GCTCGGTGCC
GAGCTGGTCT ATGGCCTGTC GCAGCCGCGG CGTTGGCGCC GGCAGCCGTT GCCGCGGGCC
TTGATCCTGC TGGTGGTGCT GCGTCTGTTG CTGGCGCGCC AGCAGAAGGG CGAGGCCCTG
CATTACGCGG AGATGCAGCG TGGCGGCTGG AGCCTGCCGG AAGACGAGTG GAGCGAGGTA
CTGGACTTTC TCGAGCGCGA GCATCTGGCC TGTCGTGCCA GCGGCGGAGG CTGGGTGCTG
TGCCGCGATC TGCACAACTT CAGCCTGCAT CAGCTGCTCG AGTGCAGTCC CTGGCCGCTG
CCCAATCTCT CGCAGTTGCC GGCGCAGCTG GACGAACCCT GGTATCCGGC GCTGCGTCAG
GCGCTGGAGC GCTTGCAGAA TGAACGCAAG GAGCAGTTCG GCGTGAGCCT GGCGACCTGG
CTGTCGGGTC CTGGCTGA
 
Protein sequence
MHRRLKDWLG FWLSLYQRFI ENRGAGNAAA LTYTTLFAVV PMMTVTFAML SAIPAFQGVG 
EEIQGFIFNN FVPSTGETVQ EYLREFTAQA RQLTWFGVGL LAVTAFLMLV TIEKTFNVIW
RVRQPRRGMS SFLLYWAILS LGPLLLGAGF AVSTYIASLS LISGPDAVVG AKTLLAFTPL
LSSIAAFTLL YAAVPNTRVP LRHALLGGLF SAILFEIAKA LFGLYVRLFP GYHLIYGAFA
TVPLFLVWIY LSWLIVLLGA ELVYGLSQPR RWRRQPLPRA LILLVVLRLL LARQQKGEAL
HYAEMQRGGW SLPEDEWSEV LDFLEREHLA CRASGGGWVL CRDLHNFSLH QLLECSPWPL
PNLSQLPAQL DEPWYPALRQ ALERLQNERK EQFGVSLATW LSGPG