| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2983 |
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| Symbol | |
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| ID | 5107701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3307979 |
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| End bp | 3308575 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640504241 |
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| Product | periplasmic nitrate reductase subunit NapC |
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| Protein accession | YP_001188470 |
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| Protein GI | 146308005 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
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| TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.000569664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.0718991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCAC TACTGGCCCT GCTCAGGGAA TACTGGGGCA TCCTGCGTCG TCCGAGCGTG
CATTACAGCC TGGGCTTTCT CACCCTGGGC GGCTTCATCG CCGGGATCAT CTTCTGGGGC
GGCTTCAACA CCGCGCTGGA AGCCACCAAC ACCGAGCAGT TCTGCATCTC CTGTCACGAG
ATGCGCGACA ACGTGTTCGT CGAGCTGCAG GACACCATTC ACTACAGCAA CCGCTCCGGC
GTGCGCGCCA CCTGCCCGGA CTGCCATGTG CCGCACCAGT GGACGGACAA GATCGCGCGC
AAGATGCAGG CGTCGAAGGA GGTCTGGGGC AAGATCTTCG GCACCATCAA CACCCGCGAC
AAGTTTCTGG AAAAACGCCG CGAGCTGGCC GAGCACGAAT GGGCACGGCT CAAGGCCAAC
GACTCGCTGG AATGCCGCAA CTGCCACAAC TTCGATTACA TGGACTTCAC CAAGCAGAGC
CCGCGCGCCC GGCAGATGCA TTCCAGCGCG CTGGCCAGCG GCGAGGCCAC CTGCATCGAT
TGCCACAAGG GCATCGCCCA CCAGTTGCCG GATATGAGCG GGGTGCCCGG TTGGTGA
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| Protein sequence | MKSLLALLRE YWGILRRPSV HYSLGFLTLG GFIAGIIFWG GFNTALEATN TEQFCISCHE
MRDNVFVELQ DTIHYSNRSG VRATCPDCHV PHQWTDKIAR KMQASKEVWG KIFGTINTRD
KFLEKRRELA EHEWARLKAN DSLECRNCHN FDYMDFTKQS PRARQMHSSA LASGEATCID
CHKGIAHQLP DMSGVPGW
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