| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2978 |
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| Symbol | |
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| ID | 5107696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3303122 |
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| End bp | 3304294 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640504236 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001188465 |
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| Protein GI | 146308000 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.110651 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTA CTCATCTCAG CCGTGGCAGC GCCGGTTATC GGCGCGCCAC TCTGGCATTG
TTCTGCGCCG GTTTCGCCAC CTTCGCCATG CTCTACTGCG TACAGCCGTT GCTGCCGCTG
CTCGCCGCGC ACTTTCGCGT GTCGGCCGCC AGCAGCAGTC TGGCGCTGTC GCTGACCACC
CTGAGCCTGG CGCTGTGTCT GCTGGTATCC GGCTCCCTGG CCGAAAGCTG GGGGCGCAAG
CCGGTGATGG CCGCGGCGCT GGGGTTGGCG GCGCTGCTCG GTATCGCCTG CGCCTTCGTG
GAGCAGTGGG GCAGCCTGCT GATACTGCGG GCGATGCTGG GGCTGGCGCT GAGCGGCTTG
CCGGCCCTGG CCATGGCCTA CGTCGGTGAA GAGTTCGATC CCGAGGCGTT ACCGGCGGCC
ATGGGCCTGT ACATCGGCGG GACCGCCCTG GGTGGCTTGC TCGGGCGTCT GCTCGCCGGT
CTGCTCAGCG ACCTTGGCGG CTGGCCCTGG GCGCTGGGCG GCATCGCCGG TCTTGGCCTG
CTGGCGCTGG GGCTGTTTCT CTGGCTGCTG CCGCCGTCCC GGTATTTCCG GGCGCAGCCG
TTGTCGCTGC GCGGGTTGCT CGGCAATTTC GCTCTGCACC TGGGCAATCC TCGCCTGCGC
GTGCTGTTCG CGCTGGCCTT CCTGCTCATG GGCGGCTTCG TCGCGCTGTT CAACTACGTG
GGCTTTCGTC TGGCAGGTGC GCCGTTCAAC CTCTCCGCCA CGGTGATCGG CCTGTTGTTC
ACCGTCTACC TGCTGGGCAT CTTCAGCGCT GGCTGGGCCG GGCGCCTGGT ACCGCGCTTT
GGTGCGCGCC AGGTTCTGTT CGGCGCGATC GCCCTGATGC TGCTCGGGGT AGCCCTGTGC
GCCGCGCCCT GGCTGAGCGC TGCGGTGGTC GGTCTGGCGC TGTTCACCCT GGGCTTCTTC
GCCGCGCACG CGGTCGCCAG CGGCCAGGTC GGTGCGCATG CCAAGGGGGC CAAGGCGCAG
GCCTCGGCGC TCTATCTGTG CGCCTACTAT CTGGGTTCGA GCCTGGTGGG CTATGTCGGT
GGCTATGTCT GGGAACATGC CGGCTGGCTG GCGCTGTTGG CCGTGCTGGC TTCGCTGTTT
GGCCTGGCGG GCGCTCTGGC GCGACGTTTG TAA
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| Protein sequence | MSATHLSRGS AGYRRATLAL FCAGFATFAM LYCVQPLLPL LAAHFRVSAA SSSLALSLTT
LSLALCLLVS GSLAESWGRK PVMAAALGLA ALLGIACAFV EQWGSLLILR AMLGLALSGL
PALAMAYVGE EFDPEALPAA MGLYIGGTAL GGLLGRLLAG LLSDLGGWPW ALGGIAGLGL
LALGLFLWLL PPSRYFRAQP LSLRGLLGNF ALHLGNPRLR VLFALAFLLM GGFVALFNYV
GFRLAGAPFN LSATVIGLLF TVYLLGIFSA GWAGRLVPRF GARQVLFGAI ALMLLGVALC
AAPWLSAAVV GLALFTLGFF AAHAVASGQV GAHAKGAKAQ ASALYLCAYY LGSSLVGYVG
GYVWEHAGWL ALLAVLASLF GLAGALARRL
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