Gene Pmen_2954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2954 
Symbol 
ID5107280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3277116 
End bp3277631 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content61% 
IMG OID640504212 
ProductMarR family transcriptional regulator 
Protein accessionYP_001188441 
Protein GI146307976 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.0252271 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTTAT GTCAAAGCTT ATATGGCAAT AATTTGGTGC CTATGACAGA TAAAAAAGTT 
CCTACTGAAA TTGATTTGTC ATCTGTGCTG GCGTTCGAGA TGCCGCTTTT CCAGGCATTG
CGGCGGCTGC AGCAGGCAGG TGAGGTGCAC GCCAAGCGCC TGGCCCGTTT TGGTGGGCTG
ACCCCCATGC AACTGATGGT GCTGCAGGTG CTGGCCAGCG AGGCGCGCCT GACCGCAAGC
GTGCTGAGCA ACCGGGTCAG CCTGACCGCG GCGACGCTGT CCGGGCTGCT CGACCGCCTC
GAGGAGCGCG GCCTGCTGCA GCGTCAGCGC GATGACGAGG ACCGCCGGCG CCAATGGCTG
CTGATCAGCG ATGCCGGGCG AGAATTGATC CAGCAGGCGC CGTCGCTGAT GCCGCCGGAA
TTCAACCGTG GTTTCGCCGC ATTGGCCGAC TGGGAGCGCC ACAGCCTGAC GGCGGCCTTA
TTGAGAGCGG CCGAGTTGTG TGGCGAGATG GATTGA
 
Protein sequence
MLLCQSLYGN NLVPMTDKKV PTEIDLSSVL AFEMPLFQAL RRLQQAGEVH AKRLARFGGL 
TPMQLMVLQV LASEARLTAS VLSNRVSLTA ATLSGLLDRL EERGLLQRQR DDEDRRRQWL
LISDAGRELI QQAPSLMPPE FNRGFAALAD WERHSLTAAL LRAAELCGEM D