| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2927 |
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| Symbol | |
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| ID | 5107645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3236844 |
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| End bp | 3238781 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640504182 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001188414 |
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| Protein GI | 146307949 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.319356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.290619 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCCC TCCGTAGCCG ACTGACCCCC GCCCTATTCG CCGCCAGCCT GGCCACCGCG
CCTGTGCCGC TACTCGCACA GATCGAACAG GTGCCCAGCA GCGCCAGCCA GCAGGAAGAA
AGCTGGACCA TCAACCTCAA GGGCGCGGAC ATCCGCGAAT TCGTCGACCA GATCGCCGCC
ATCACCGGGC AGACCTTCGT CGTCGACCCG CGCGTGAAGG GCCAGGTCAA CGTGGTGTCC
AACACGCCGC TGGGCTTGTC CGAGGTCTAC CAGCTGTTCC TTTCGGTCAT GGCCACCCAC
GGCTTCAGCG TACTGACCCA GGGCGACCAG GCGCGCATCG TGCCCAATGC CGAGGCCAAG
GCCGAAGCCG GCGAAGGCCG CCCCGCCCCG GACCGCCTGG AAACCCGCCT GATCCAGGTG
CAGCACGCGC CGGTGGCGGA ACTGATTCCG CTGATCCGCC CGCTGGTGCC GCAATACGGC
CATCTGGCCG CCGTGACCTC GTCCAACGCG CTGATCATCA GCGACCGCAG CGCCAACATC
GCGCGCATCC AGGACCTGAT GCGCCAGCTC GACCAGAGCG GCGCCCAAGA CTTCAGCGTG
GTCACCCTGC AGCACGCCTG GGTGATGGAC GCCGCCGAGG TGCTCAACAC CTCCATTGCC
CGCGGCCAGG CCAAGGGCAC CAGCGCCACC CAGGTGGTGG CCGACGCTCG CACCAATCGC
CTGATCCTCC TCGGCCCACC GGAGGCACGT GCCAAACTGG CCGACCTCGC CCGCTCGCTG
GACAGCCCCT CCAGCCGCTC GGCCAACACC CGGGTGATCC GCCTGCGCCA CAACGACGCC
AAGTCGCTGG CCGAAACCCT CGGCGATATC TCCGAAGGCC TGAAGAACAA GGAGGGCAGC
GAAACCACCG GTCGCCAGTC CAACATCCTC ATCCGCGCCG ACGAGAGCCT GAACGCCCTG
GTGCTGCTGG CCGAGCCGGA TCTGGTGGCC ACCCTCGAAG ACATCGTGCG CCAGCTCGAC
GTGCCGCGCG CGCAGGTGAT GGTCGAGGCG GCCATCGTCG AGGTCTCCGG CGACATCACC
GACGCCGTCG GCGTGCAGTG GGCGGTGGAC GCCCGCGGCA ATACGGGCGG TCTGGGCGGG
GTCAACTTCG GCGGCACCGG CCTGTCGGTC GGCACCGTGC TGCAGATCCT GCAGAGCGGC
GAGATCCCCG AGAATACCAC CCTGCCCGAC GGCGCCATCA TCGGTATCGG CAGCGACCGC
TTCGGTGCGC TGATCACCGC GCTGTCGGCC AACAGCAAGA GCAACCTACT GTCCACGCCC
AGCCTGCTGA CCCTGGACAA CCAGAAGGCG GAAATCCTCG TGGGGCAGAA CGTGCCCTTC
CAGACCGGCT CCTACACCAC CGATGCCTCG GGCGCCGGCA ACCCCTTCAC CACCATCGAG
CGCAAGGACA TCGGCGTGAC CCTCAAGGTC ACCCCAAGCA TCAACGAAGG CGCCACCCTG
CGCCTGGAGA TCGAGCAGGA AATCTCCTCC ATCGCTCCCA GCACCGGGCT CAACGCCCAG
GCGGTGGACC TGGTGACCAA CAAGCGCTCG ATCAAGAGCA CCATCCTCGC CGACGACGGC
CAGGTGATCG TGCTCGGCGG GCTGATTCAG GACGACGTCA CCCAATCCAT CTCCAAGGTG
CCGCTGCTGG GCGACATTCC CCTGATCGGC GGGCTGTTCC GCTCCACCCG CGACTCCCAC
GTCAAGCGCA ACCTGATGGT CTTCCTGCGG CCCACGGTGG TCCGCGACGG TGCCGGTCTG
GCGGCGCTGT CGGGCAAGAA GTACAGCGAC ATCCGCATTC TCGGCGATGG CAGCAACGGC
CGTCCGAGCA TCCTGCCCAG CCAGCCGGCG CAGTTGTTCG ATGGCCAGGG CGCACCGGCG
GTTGATCTGC GCGAGTGA
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| Protein sequence | MHALRSRLTP ALFAASLATA PVPLLAQIEQ VPSSASQQEE SWTINLKGAD IREFVDQIAA
ITGQTFVVDP RVKGQVNVVS NTPLGLSEVY QLFLSVMATH GFSVLTQGDQ ARIVPNAEAK
AEAGEGRPAP DRLETRLIQV QHAPVAELIP LIRPLVPQYG HLAAVTSSNA LIISDRSANI
ARIQDLMRQL DQSGAQDFSV VTLQHAWVMD AAEVLNTSIA RGQAKGTSAT QVVADARTNR
LILLGPPEAR AKLADLARSL DSPSSRSANT RVIRLRHNDA KSLAETLGDI SEGLKNKEGS
ETTGRQSNIL IRADESLNAL VLLAEPDLVA TLEDIVRQLD VPRAQVMVEA AIVEVSGDIT
DAVGVQWAVD ARGNTGGLGG VNFGGTGLSV GTVLQILQSG EIPENTTLPD GAIIGIGSDR
FGALITALSA NSKSNLLSTP SLLTLDNQKA EILVGQNVPF QTGSYTTDAS GAGNPFTTIE
RKDIGVTLKV TPSINEGATL RLEIEQEISS IAPSTGLNAQ AVDLVTNKRS IKSTILADDG
QVIVLGGLIQ DDVTQSISKV PLLGDIPLIG GLFRSTRDSH VKRNLMVFLR PTVVRDGAGL
AALSGKKYSD IRILGDGSNG RPSILPSQPA QLFDGQGAPA VDLRE
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