| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2921 |
|---|
| Symbol | |
|---|
| ID | 5107639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3231752 |
|---|
| End bp | 3232135 |
|---|
| Gene Length | 384 bp |
|---|
| Protein Length | 127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640504176 |
|---|
| Product | general secretion pathway protein I |
|---|
| Protein accession | YP_001188408 |
|---|
| Protein GI | 146307943 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.259382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.143234 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACG CCCGCGGTTT CACCCTGCTC GAGGTGCTGG TGGCGCTGGC CATCTTCGCC
CTGGTCGCCG CCAGCGTGCT CACCGCCAGC GCGCGCAGCG TCAGAACGGC CGCGCAGCTG
GAGGAGCGCA CCCTGGCCAT GTGGGTGGCC GACAACCAGC TGGTGGAGCT GCAACTGGCC
GAGACGCCGC CCGCCGATGG CCGCGACCAG GGCCAGGTGG AATTCGCCGG GCGGCGCTGG
CTGTGGCAGA GCGAAATCCA GGCCACCAGC GAGCCGGCCA TGCGTCGCGT GACCCTGTGG
GTCGCCGCCG AGCAACGCGG CGTCAGCGGC GATCTGCGCG AGCGGGCCGT GGTCAGTCTC
AGCGGTTTTC TGGGGGCGCC ATGA
|
|---|
| Protein sequence | MKHARGFTLL EVLVALAIFA LVAASVLTAS ARSVRTAAQL EERTLAMWVA DNQLVELQLA
ETPPADGRDQ GQVEFAGRRW LWQSEIQATS EPAMRRVTLW VAAEQRGVSG DLRERAVVSL
SGFLGAP
|
|---|
| |