| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2916 |
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| Symbol | |
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| ID | 5107634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3227173 |
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| End bp | 3227946 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640504171 |
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| Product | cationic amino acid ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001188403 |
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| Protein GI | 146307938 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0769727 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA TCGCACTGCT CGGCGCCCTG GCGCTGTCCA TGTTGTCGCC CCTGGCCATG
GCCGAGAAGC CGCTGCGTAT CGGCATCGAG GCGGCCTATC CTCCCTTTGC CTTCAAGACC
CCGGACGGCC AGATATCCGG TTTCGACTAC GACATCGGCA ACGCCCTGTG CGAAGAGATG
AAGGTCGAGT GCAAGTGGAT CGAGCAGGAG TTCGATGGCC TGATCCCGGC GCTCAAGGTG
CGCAAGTTCG ACGCCGTGCT GTCGTCCATG TCGATCACCG AAGATCGCCT GAAATCCGTG
GACTTCACCG GCAAGTACTA CCACACCCCG GCCAAGCTGG CGATGAAGGC CGGTACCGAG
CTGAAAGATC CGCTGGTCGA CCTCAAGGGC AAGAAGGTCG GCGTGCAGCG CGCCTCCATC
TACGACCGTT ATGCCACCGA CGTCTTCGCA CCGGCGGGTA TCGAGGTGGT GCGTTACAGC
TCGCAGAACG AAATCTTCCT CGATCTGCAG TCCGGTCGCC TGGATGCCAC CCTGGCCGAC
TCGGTGAACA TCGACGACGG TTTCCTCAAG ACCGATGCCG GCAAGGGCTT TGCCTTCACC
GGCCCGGACT ACACCGAGAC CAAGTATTTC GGTGAGGGTG CCGGTATCGC CGTGCGCAAG
GGTGACAAGG AGTTGGCCGA CAAGATCAGC GCCGCCATCC TGGCCATTCG CGCCAACGGC
AAATACAAGG AAGTGCAGGA CAAGTACTTC GACTTCGACG TTTACGGCGA GTAA
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| Protein sequence | MKKIALLGAL ALSMLSPLAM AEKPLRIGIE AAYPPFAFKT PDGQISGFDY DIGNALCEEM
KVECKWIEQE FDGLIPALKV RKFDAVLSSM SITEDRLKSV DFTGKYYHTP AKLAMKAGTE
LKDPLVDLKG KKVGVQRASI YDRYATDVFA PAGIEVVRYS SQNEIFLDLQ SGRLDATLAD
SVNIDDGFLK TDAGKGFAFT GPDYTETKYF GEGAGIAVRK GDKELADKIS AAILAIRANG
KYKEVQDKYF DFDVYGE
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