Gene Pmen_2893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2893 
Symbol 
ID5107808 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3202252 
End bp3204030 
Gene Length1779 bp 
Protein Length592 aa 
Translation table11 
GC content64% 
IMG OID640504144 
Productoxaloacetate decarboxylase 
Protein accessionYP_001188380 
Protein GI146307915 
COG category[C] Energy production and conversion
[I] Lipid transport and metabolism 
COG ID[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
[COG5016] Pyruvate/oxaloacetate carboxyltransferase 
TIGRFAM ID[TIGR01108] oxaloacetate decarboxylase alpha subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.345555 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCCG TAAAACAAGC ACTCGGGATT ACCGATGTGG TGCTGCGTGA TGCTCACCAA 
TCCATTCTGG CCACCCGAGT ACGCCTGGAA GACATGCTGC CGATCGCTGC CAAGCTCGAT
CAGGTCGGCT TCTGGTCGGT GGAGTCCTGG GGCGGCGCGA CCTTCGATGC CTGCATTCGT
TACCTCGGCG AAGACCCCTG GGAGCGCATC CGCGAACTGA AGAAGGCCAT GCCCAACACC
CGTCAGCAGA TGCTGCTGCG TGGGCAGAAC CTGCTGGGCT ATCGTCACTA CGCCGACGAT
GTGGTGGAGA AGTTCGTCGA GCGCGCGGCT GTCAACGGTG TCGACGTGTT CCGCGTGTTC
GATGCGATGA ACGACCCGCG CAACCTGGAG ACCGCTCTCA AGGCCGTCAA GAAACAGGGC
AAGCATGCCC AGGGCACCAT CTCCTACACC ACCAGCCCGG TGCATACCCT GGACATGTGG
GTCGATCTGG CCAAGCAGAT CGAAGACATG GGCGCCGACT CGGTGGCCAT CAAGGACATG
GCGGGCATCC TCACCCCGTA CACCGCCTTC GAACTGGTGT CGCGCCTGAA GGCCAGCCTG
GCCATCCCGA TTCACATGCA GTGCCATGCC ACCGCCGGGC TGTCGTCCGT GGCGATTCTC
AAGGCGGTGG AAGCCGGTAT CGACAACGTC GACACCGCCA TCTCCTCGCT GTCGATGACT
TACGGTCATT CGCCGACCGA GTCGGTGGTG GCCATGTTCC AGGGCACCGA GCGCGACACC
GGGCTCAACC TGGAGCTGCT GGAGGAAATC GCCGCCTACT TCCGCGAGGT GCGCAAGAAG
TACGCGAAGT TCGAGGGTAA CCTCAAGGGC GTCGATTCGC GCATCCTGGT CGCCCAGGTC
CCGGGCGGCA TGCTCACCAA TATGGAAAGC CAGCTGAAAG AGCAGGGCGC CCAGGACAAG
TTCGACCAGG TGCTGGCCGA GATCCCGCGC GTTCGCGAAG ACCTCGGCTT CATCCCGCTG
GTGACCCCGA CCTCGCAGAT CGTCGGCACC CAGGCGGTGA TCAACGTGCT CACCGGTGAG
CGTTACAAGT CCATCACCAA GGAAACCGCC GGCGTACTCA AGGGCGAATA CGGTGCCGCG
CCCGCGCCGT TCAACGCCGA GCTGCAGGCT CGTGTACTGG ATGGCGGCGA GGCCATCACC
TGCCGTCCGG CCGACCTGCT CGAGGCCGAA ATGGACAAGC TGACCGCCGA ACTCAAGGGT
ATCGCCCAGG AGAAAGGCAT CAAGCTGGCC GTCGATGAGA TCGACGACGT GCTGACCTAC
GCGCTGTTCC CGCAGATCGG CCTGAAGTTC CTGGAAAACC GCGGCAACCC GGCGGCCTTC
GAGCCGGCGC CGACCGGTAA GGAAGCCCCG GCTCGCGAGG CCGGCAAGCC CGAGGTCTAC
ACCGTCGAGG TCAATGGCAA GTCGTTCGTC GTGCAGGTGG GCGAAGGCGG CGATATCGAA
GGCATCAAGC CTGTCGGTGG CACGGCGAGC GCCGCGCCTG CGGCGGCCCC GGTCGCGGCG
GGCGGTGGCG AGCCGCAGGC CGCACCGCTG GCCGGCAATA TCTTCAAGGT ACTGGTGCAG
CCCGGCCAGG CCGTGGAGGA GGGGCAACTG GTGATCATCC TCGAAGCGAT GAAGATGGAA
ACCGAAATCC GTGCCTTCAA GGCCGGTACC GTCGGTGCCG TCAACGTCAA GGTCGGCGAT
GCGGTGGCGG TGGGCGCAAG CCTGCTGACC ATCGGCTGA
 
Protein sequence
MTAVKQALGI TDVVLRDAHQ SILATRVRLE DMLPIAAKLD QVGFWSVESW GGATFDACIR 
YLGEDPWERI RELKKAMPNT RQQMLLRGQN LLGYRHYADD VVEKFVERAA VNGVDVFRVF
DAMNDPRNLE TALKAVKKQG KHAQGTISYT TSPVHTLDMW VDLAKQIEDM GADSVAIKDM
AGILTPYTAF ELVSRLKASL AIPIHMQCHA TAGLSSVAIL KAVEAGIDNV DTAISSLSMT
YGHSPTESVV AMFQGTERDT GLNLELLEEI AAYFREVRKK YAKFEGNLKG VDSRILVAQV
PGGMLTNMES QLKEQGAQDK FDQVLAEIPR VREDLGFIPL VTPTSQIVGT QAVINVLTGE
RYKSITKETA GVLKGEYGAA PAPFNAELQA RVLDGGEAIT CRPADLLEAE MDKLTAELKG
IAQEKGIKLA VDEIDDVLTY ALFPQIGLKF LENRGNPAAF EPAPTGKEAP AREAGKPEVY
TVEVNGKSFV VQVGEGGDIE GIKPVGGTAS AAPAAAPVAA GGGEPQAAPL AGNIFKVLVQ
PGQAVEEGQL VIILEAMKME TEIRAFKAGT VGAVNVKVGD AVAVGASLLT IG