Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2893 |
Symbol | |
ID | 5107808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3202252 |
End bp | 3204030 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640504144 |
Product | oxaloacetate decarboxylase |
Protein accession | YP_001188380 |
Protein GI | 146307915 |
COG category | [C] Energy production and conversion [I] Lipid transport and metabolism |
COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.345555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCCG TAAAACAAGC ACTCGGGATT ACCGATGTGG TGCTGCGTGA TGCTCACCAA TCCATTCTGG CCACCCGAGT ACGCCTGGAA GACATGCTGC CGATCGCTGC CAAGCTCGAT CAGGTCGGCT TCTGGTCGGT GGAGTCCTGG GGCGGCGCGA CCTTCGATGC CTGCATTCGT TACCTCGGCG AAGACCCCTG GGAGCGCATC CGCGAACTGA AGAAGGCCAT GCCCAACACC CGTCAGCAGA TGCTGCTGCG TGGGCAGAAC CTGCTGGGCT ATCGTCACTA CGCCGACGAT GTGGTGGAGA AGTTCGTCGA GCGCGCGGCT GTCAACGGTG TCGACGTGTT CCGCGTGTTC GATGCGATGA ACGACCCGCG CAACCTGGAG ACCGCTCTCA AGGCCGTCAA GAAACAGGGC AAGCATGCCC AGGGCACCAT CTCCTACACC ACCAGCCCGG TGCATACCCT GGACATGTGG GTCGATCTGG CCAAGCAGAT CGAAGACATG GGCGCCGACT CGGTGGCCAT CAAGGACATG GCGGGCATCC TCACCCCGTA CACCGCCTTC GAACTGGTGT CGCGCCTGAA GGCCAGCCTG GCCATCCCGA TTCACATGCA GTGCCATGCC ACCGCCGGGC TGTCGTCCGT GGCGATTCTC AAGGCGGTGG AAGCCGGTAT CGACAACGTC GACACCGCCA TCTCCTCGCT GTCGATGACT TACGGTCATT CGCCGACCGA GTCGGTGGTG GCCATGTTCC AGGGCACCGA GCGCGACACC GGGCTCAACC TGGAGCTGCT GGAGGAAATC GCCGCCTACT TCCGCGAGGT GCGCAAGAAG TACGCGAAGT TCGAGGGTAA CCTCAAGGGC GTCGATTCGC GCATCCTGGT CGCCCAGGTC CCGGGCGGCA TGCTCACCAA TATGGAAAGC CAGCTGAAAG AGCAGGGCGC CCAGGACAAG TTCGACCAGG TGCTGGCCGA GATCCCGCGC GTTCGCGAAG ACCTCGGCTT CATCCCGCTG GTGACCCCGA CCTCGCAGAT CGTCGGCACC CAGGCGGTGA TCAACGTGCT CACCGGTGAG CGTTACAAGT CCATCACCAA GGAAACCGCC GGCGTACTCA AGGGCGAATA CGGTGCCGCG CCCGCGCCGT TCAACGCCGA GCTGCAGGCT CGTGTACTGG ATGGCGGCGA GGCCATCACC TGCCGTCCGG CCGACCTGCT CGAGGCCGAA ATGGACAAGC TGACCGCCGA ACTCAAGGGT ATCGCCCAGG AGAAAGGCAT CAAGCTGGCC GTCGATGAGA TCGACGACGT GCTGACCTAC GCGCTGTTCC CGCAGATCGG CCTGAAGTTC CTGGAAAACC GCGGCAACCC GGCGGCCTTC GAGCCGGCGC CGACCGGTAA GGAAGCCCCG GCTCGCGAGG CCGGCAAGCC CGAGGTCTAC ACCGTCGAGG TCAATGGCAA GTCGTTCGTC GTGCAGGTGG GCGAAGGCGG CGATATCGAA GGCATCAAGC CTGTCGGTGG CACGGCGAGC GCCGCGCCTG CGGCGGCCCC GGTCGCGGCG GGCGGTGGCG AGCCGCAGGC CGCACCGCTG GCCGGCAATA TCTTCAAGGT ACTGGTGCAG CCCGGCCAGG CCGTGGAGGA GGGGCAACTG GTGATCATCC TCGAAGCGAT GAAGATGGAA ACCGAAATCC GTGCCTTCAA GGCCGGTACC GTCGGTGCCG TCAACGTCAA GGTCGGCGAT GCGGTGGCGG TGGGCGCAAG CCTGCTGACC ATCGGCTGA
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Protein sequence | MTAVKQALGI TDVVLRDAHQ SILATRVRLE DMLPIAAKLD QVGFWSVESW GGATFDACIR YLGEDPWERI RELKKAMPNT RQQMLLRGQN LLGYRHYADD VVEKFVERAA VNGVDVFRVF DAMNDPRNLE TALKAVKKQG KHAQGTISYT TSPVHTLDMW VDLAKQIEDM GADSVAIKDM AGILTPYTAF ELVSRLKASL AIPIHMQCHA TAGLSSVAIL KAVEAGIDNV DTAISSLSMT YGHSPTESVV AMFQGTERDT GLNLELLEEI AAYFREVRKK YAKFEGNLKG VDSRILVAQV PGGMLTNMES QLKEQGAQDK FDQVLAEIPR VREDLGFIPL VTPTSQIVGT QAVINVLTGE RYKSITKETA GVLKGEYGAA PAPFNAELQA RVLDGGEAIT CRPADLLEAE MDKLTAELKG IAQEKGIKLA VDEIDDVLTY ALFPQIGLKF LENRGNPAAF EPAPTGKEAP AREAGKPEVY TVEVNGKSFV VQVGEGGDIE GIKPVGGTAS AAPAAAPVAA GGGEPQAAPL AGNIFKVLVQ PGQAVEEGQL VIILEAMKME TEIRAFKAGT VGAVNVKVGD AVAVGASLLT IG
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