| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2872 |
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| Symbol | |
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| ID | 5107787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3179919 |
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| End bp | 3181595 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504122 |
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| Product | cyclic peptide transporter |
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| Protein accession | YP_001188359 |
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| Protein GI | 146307894 |
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| COG category | [P] Inorganic ion transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.27305 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGC TGCGTCTGGT TTTCCGCGAA TATCGCTGGC CCATCGCGCT GGTGCTGGCG
CTCAGCCTGG GCAGCGCACT GCTCAGCGTG GCGGTGATTG CCTTCATCAA TCAGCGCATG
CTTACCCCGG CGAGCAATCC GGGGGTGGCG CTGGGGCAGT TCGTCGCCTT GCTGGCCTTG
CTGCTGGTGC TGGCCTCGGC GGCGCAACTG TCGCTGACGG CGCTGGGCCA TCGCTTCGTC
TATCGCCTGC GCCGTGCGCT GGTGAAGCGG GTGCTGGACA CCAGCATCGA GCGTCTGGAG
GTCATCGGTG GCTCCAATAT CATCGCCAGT CTGTCCAGCG ACATCCGCAA TATCACCCTG
GCCTTCGTGC ATCTGCCCGA ACTGATCTAC GGCAGCGTGC TGACGCTGGC GGCGTTCGCC
TATCTGGCCT GGCTGTCGCC GGGGCTGTTC GTCACCACAT TGCTGTGGAT GAGTTTCACC
CTCGGCGTAG GCTGGCTGCT GGTCGGGCGC CTCAATCACC ACCTGCGCAT GCTGCGTGAG
TCCGAGGATC GTCTGTACGG CGACTACCAG GCGGTGATCG ACGGGCGCAA GGAGCTGACC
CTCAACCGCG ACCGCGCGCA GCGCCTGTAC GAGGACGAGT TCGACCTCAG CGCGCGCGCC
TATCGCGATC ACGTGACCCT GGCCGACCGT TACCACGGCC TGGCCAGCAA CTGGGCCAAC
ATCATGGTGC TGGGCACCAT CGGCCTGGTG TTCTACCTGG CCAACGGCCT GGGTTGGGCG
TCCACGGCGG TGGCGTCGAC CTATGCGCTG ACCATTCTGT TCATGCGTAC ACCGCTGGTG
TCGGCGGTGG CGGCGATCCC GACGCAGATC GCCGGGCGCG TGGCGCTGGA CAAGGTCGAG
TCGCTGGCGC TGGCGCCGCA TGTAGAGGCG TTCGAGCATC CGGCCGACCC CTTGAGCGGA
CAGTGGCAGG TGTTGGAACT GCATGAGGTG GAATATCGCT ATCCGGCACA GGACGGTGAG
CCCGGCTTCG ACGTGGGCCC GGTCAGTCTG CGCCTTGAGC GCGGCGAGAC GGTGTTTCTG
GTCGGTGGCA ACGGCAGCGG CAAGTCGACT CTGGCACGTC TGCTGACGGG CCTGTACATC
CCGCAACGCG GCGAGATCCG TATCGATGGC CGGGTGCTCG GGCCGCAGGA GTGGCCGGCG
TACCGTCAGC TGTTCGCATC GGTGTTCACC GACTACCACC TGTTTTCGCA GCTGATTGGC
CCGCTCGGCG TGGCGGCGTC GGATGAAGAA CTCGAGCACT GGCTGGGCAG TTTGCACATG
CGCCACAAGG TGCAGGTGGC GGCGGGGCGT CTGCGTGACA CACGTCTGTC CGCCGGTCAG
CGCAAGCGTC TGGCCCTGCT GCTGGCACTG CTCGAAGCGC GCGACATCCT GCTGCTCGAC
GAATGGGCCG CCGATCAGGA TCCGCTGTTC CGTCAGGTGT TCTATCGCGA GCTGCTGCCG
CAGTTGAAGG CCGCCGGCAA GACCGTATTC GCCATCAGTC ACGACGATCA TTACTTCGAC
CAGGCCGACC GCCTGCTGAA GATGGATGGT GGGCAGCTCC ACGAACTGCA GGGCGAGCAT
CGTGCCCGGG CCAGTCGCAA CGCGCTGCTG GAAATTGGTG GCGCTGCCCG TTCCTGA
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| Protein sequence | MKLLRLVFRE YRWPIALVLA LSLGSALLSV AVIAFINQRM LTPASNPGVA LGQFVALLAL
LLVLASAAQL SLTALGHRFV YRLRRALVKR VLDTSIERLE VIGGSNIIAS LSSDIRNITL
AFVHLPELIY GSVLTLAAFA YLAWLSPGLF VTTLLWMSFT LGVGWLLVGR LNHHLRMLRE
SEDRLYGDYQ AVIDGRKELT LNRDRAQRLY EDEFDLSARA YRDHVTLADR YHGLASNWAN
IMVLGTIGLV FYLANGLGWA STAVASTYAL TILFMRTPLV SAVAAIPTQI AGRVALDKVE
SLALAPHVEA FEHPADPLSG QWQVLELHEV EYRYPAQDGE PGFDVGPVSL RLERGETVFL
VGGNGSGKST LARLLTGLYI PQRGEIRIDG RVLGPQEWPA YRQLFASVFT DYHLFSQLIG
PLGVAASDEE LEHWLGSLHM RHKVQVAAGR LRDTRLSAGQ RKRLALLLAL LEARDILLLD
EWAADQDPLF RQVFYRELLP QLKAAGKTVF AISHDDHYFD QADRLLKMDG GQLHELQGEH
RARASRNALL EIGGAARS
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