Gene Pmen_2825 details

Gene Information

• Locus tag: Pmen_2825
• Symbol: fliF
• ID: 5107621
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas mendocina ymp
• Kingdom: Bacteria
• Replicon accession: NC_009439
• Strand: -
• Start bp: 3101772
• End bp: 3103556
• Gene Length: 1785 bp
• Protein Length: 594 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640504075
• Product: flagellar MS-ring protein
• Protein accession: YP_001188312
• Protein GI: 146307847
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.676627
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.0163238
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTGAGG CAGCAGTAGC AAACGTACCG GTCAAGAGCG AAGCAGCGGA GCCCAAGAAG 
CCGCTGTTCG GCTTGAGCTT CCTGGAAAAT CTCGCCGAGA TGTCGGTGCT GCGTCAGCTC 
GGCCTGCTGG TCGGTCTGGC CGCCAGCGTG GCCATCGGCT TTGCCGTGGT GCTCTGGTCG 
CAGCAGCCGG ACTATCGTCC GCTGTATGGC AGCCTCAATG GCCTGGACGC CACCCAGGTG 
GTGGAAACGC TCAATGCCGC GGGCATCAAC TACACCGTCG AGCCCAACTC CGGCGCCTTG 
CTGGTCAAGG CCGACGATCT GAGCCGTGCG CGTTTGCGCC TGGCCGCCGC CGGCGTGGCG 
CCCACCGACA ACAGCGTCGG CTTCGAGATT CTCGACCGCG AGCAGGGCCT GGGTACCAGT 
CAATTCATGG AGGCCACCCG CTATCGTCGT GGCCTGGAAG GCGAGCTGGC GCGTACCGTG 
TCCAGCCTCA ACAACGTCAA GGCTGCGCGC GTGCATCTGG CCATGCCCAA GGCTTCGGTG 
TTCGTGCGTG ACGAGCGCAA GCCGTCCGCA TCGGTGCTGG TGGAGCTCTA TCCGGGGCGG 
GCGCTGGAGC CCAGCCAGGT GATGGCCATC GTCAATCTGG TCGCTACCAG CGTGCCGGAG 
CTGGACAAGG GCCAGGTCAC CGTGGTCGAC CAGAAGGGCA ACCTGCTGTC GGATCAGCAG 
GAGCTCTCCG AGCTGACCAT GGCCGGCAAG CAGTTCGACT ACACCCGCCG CATGGAAACG 
CTGTTCACCC AGCGCGTGCA CAACATCCTG CAGCCGGTGC TGGGCACCGG CCGCTACAAG 
GCTGAGGTAT CGGCCGACGT GGATTTCAGC TCGGTGGAGT CCACCTCCGA GATGTTCAAC 
CCGGACCAGC CGGCGCTGCG CAGCGAGCAG CAGGTCAACG AGCAACGTCA GAGCAGCCTG 
CCGCCGCAAG GTGTGCCTGG CGCGCTGTCC AATCAGCCGC CCGGTGCTGC GGCCGCTCCC 
GAACAGGCCG GTGGCGCTGC GGGGGCTGCC GGCCCGGTAG CCCCCGGTCA GCCGCTGGTG 
GATGCCAACG GTCAGCAGAT CACCGACCCG ATTACCGGTC AGCCGATGCT GGCGCCGTAC 
CCGGCCGACA AGCGTGAGCA GTCCACGCGC AACTTCGAGC TGGACCGTTC GATCAGCTAC 
ACCAAACAGC AGCAGGGGCG CCTGCGCCGT CTGTCGGTGG CCGTGGTGGT GGATGATCAG 
GTGCGCGTCG ACCCGGCCAC TGGCGAAGCT AACCGAGTGC CGTGGAGCGC CGATGATCTG 
GCTCGCTTCA CGCGTCTGGT GCAGGACTCG GTGGGCTTCG ATGCCAGCCG TGGCGACAGC 
GTCAGCGTGA TCAACACCGC CTTTACCGCC TCGCTGGGCG AAGAGATTCC CGACATTCCG 
TTCTACACCC AGCCCTGGTT CTGGGACATC GTCAAGCAGG TGCTCGGCGT GCTGTTCATC 
CTGGTGCTGG TGTTCGGTGT GCTGCGTCCG GTGCTCAACA ACATCACCGG CGGTGGCAAG 
GGCAAGGGGC TGGCCGAAAC CGGCGACGTC GAGTTGGGCG AGATGGCCGG CCTGGATGGC 
GAACTGTCCG AAGATCGCGT CAGCCTGGGC GGCCCGCAAA GCATACTGCT GCCCAGCCCC 
AGCGAGGGGT ATGATGCACA ATTGAACGCC ATCAAGAGTC TGGTGGCCGA AGATCCTGGT 
CGCGTGGCCC AGGTAGTGAA AGAGTGGATC AACGCCGATG AGTGA 

 

Protein sequence

MAEAAVANVP VKSEAAEPKK PLFGLSFLEN LAEMSVLRQL GLLVGLAASV AIGFAVVLWS 
QQPDYRPLYG SLNGLDATQV VETLNAAGIN YTVEPNSGAL LVKADDLSRA RLRLAAAGVA 
PTDNSVGFEI LDREQGLGTS QFMEATRYRR GLEGELARTV SSLNNVKAAR VHLAMPKASV 
FVRDERKPSA SVLVELYPGR ALEPSQVMAI VNLVATSVPE LDKGQVTVVD QKGNLLSDQQ 
ELSELTMAGK QFDYTRRMET LFTQRVHNIL QPVLGTGRYK AEVSADVDFS SVESTSEMFN 
PDQPALRSEQ QVNEQRQSSL PPQGVPGALS NQPPGAAAAP EQAGGAAGAA GPVAPGQPLV 
DANGQQITDP ITGQPMLAPY PADKREQSTR NFELDRSISY TKQQQGRLRR LSVAVVVDDQ 
VRVDPATGEA NRVPWSADDL ARFTRLVQDS VGFDASRGDS VSVINTAFTA SLGEEIPDIP 
FYTQPWFWDI VKQVLGVLFI LVLVFGVLRP VLNNITGGGK GKGLAETGDV ELGEMAGLDG 
ELSEDRVSLG GPQSILLPSP SEGYDAQLNA IKSLVAEDPG RVAQVVKEWI NADE