| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2789 |
|---|
| Symbol | |
|---|
| ID | 5107585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3069440 |
|---|
| End bp | 3070195 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504039 |
|---|
| Product | heme exporter protein CcmC |
|---|
| Protein accession | YP_001188276 |
|---|
| Protein GI | 146307811 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.396306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.546965 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGGA CCTGGTTTCA CAAATGGGGT TCGCCCAAGT GGTTCTATGA GATGAGCGGT
CGCTGGCTGC CCTGGCTGAG CATCGCCGCG GTGCTGCTGA TCGTCTCCGG CCTGGTCTGG
GGCCTGGCCT TCGCACCGCC GGACTACCAG CAGGGCAACA GCTTCCGCAT CATCTACATC
CACGTGCCTG CGGCGTTCCT CGCCCAGTCC ATCTACGTGA CGCTGGCCAT CGCTGGCCTG
GTGGGCCTGG TCTGGAAGAT GAAACTGGCC GACGTCGCCC TGCAGCAGGC CGCGCCCATC
GGTGCCTGGA TGACCGCCAT TGCGCTGCTC ACCGGCGCCA TCTGGGGCAA GCCGACCTGG
GGCACCTACT GGGTGTGGGA CGCGCGCCTG ACCTCGATGC TGATCCTGCT GTTCCTCTAC
TTCGGCGTCA TCGCCCTGGG CAACGCCATC AGCAACCGCG ACAGCGCCGC CAAGGCCTGC
GCCGTGCTGG CCATCGTCGG CGTGGTGAAC ATTCCGATCA TCAAGTACTC GGTGGAGTGG
TGGAACTCGC TGCACCAGAC CGCCACCTTC AAGATCACCG AGAAGCCGGC CATGCCGGTG
GAAATGTGGC TGCCGCTGCT GCTGGCGGTG CTGGGCTTCT ACTGCTTCTT CGGCGCCGTG
CTGCTCTATC GCATGCGCCT GGAGGTGCTC AAGCGCGAGG CACGCAGCAG CTGGGTGAAG
ACCGAAGTGC AGAACCTCGT GGAGGGCAAG GCATGA
|
|---|
| Protein sequence | MNWTWFHKWG SPKWFYEMSG RWLPWLSIAA VLLIVSGLVW GLAFAPPDYQ QGNSFRIIYI
HVPAAFLAQS IYVTLAIAGL VGLVWKMKLA DVALQQAAPI GAWMTAIALL TGAIWGKPTW
GTYWVWDARL TSMLILLFLY FGVIALGNAI SNRDSAAKAC AVLAIVGVVN IPIIKYSVEW
WNSLHQTATF KITEKPAMPV EMWLPLLLAV LGFYCFFGAV LLYRMRLEVL KREARSSWVK
TEVQNLVEGK A
|
|---|
| |