| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2783 |
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| Symbol | |
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| ID | 5107579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3064586 |
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| End bp | 3065797 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640504033 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001188270 |
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| Protein GI | 146307805 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.924428 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATT TCTGGTTGCC CGCCGGGCTG CTGTTGCTGA CCGCCCTGGC GTTTCTGCTG
ATTCCGGTGC TGCGCATTCG CAAGCTGCAG GCCGAAGAAG ACCGCACCGC GCTCAACGTC
ACCCTCTATC AGGAGCGCCT GCAGGAGCTG GAAGCCCAGC GCCAGGTCGG CGTGCTCGAT
GATGCGCAGC TCGAGGCCGG CCGTGCCGAA GCCGCGCGCG AACTGTTGGC CGACACCGAA
GGCGTGCAGC GCCGTAGCGG CGTGCTCGGC GGCAAGGTGC CGCTGGTCTG CGCACTGCTG
GTGCCGGTGC TGGGCGTCGC CCTGTATCTG CACTGGGGCG CGCTCGATCA GGTCGAGCAG
GCGCGCAACT TCGCCGCCCA GCAGCCGCAG AGCATCGAGG AGATGACCGC GCGCCTGGAG
CAGACCGTCA AGCAGCAGCC GGACTCGGCC GAGGCCTGGT ACTTCCTCGG TCGCACCTAC
ATGGCCCAGG AGCGTGCCGG CGATGCCGCC AAGGCCTTCG AGCAGGCGGT GAACCTTGCC
GGCCGCGCGC CGGAGCTGCT CGGCCAGTGG GCGCAGGCGC TGTACTTCGC CGAAGGCAAG
CAGTGGAACG AGCAACTGCA GGCTCTGACC GACGAGGCGC TGAAGGCCGA TCCGGAGGAG
GTCACCAGCC TCGGCCTGCT CGGTATCGCC GCCTATGAAA GCCAGCGCTA CGCCGATGCC
GTGCGCTACT GGGAGCGCCT GGTGGCCGTG CTGCCGGAGC AGGACCCGTC GCGCATGGCC
ATCGCCGGTG GTATCGAGCG CGCCCGTCAG CAGATGGGCG AGGGCGAGCA GCCCGGCGCT
GCCGCCGAGC CGGGTGCCAA GGTACATGCC TTGGAGGTCA GCGTATCGCT GGCGCCCGAG
GTGCAGCGCC AGGTGCAGCC GGACGACGCC GTATTCATCT TCGCCCGTGC CCTCAGCGGC
CCGCCCATGC CGCTGGCGGT CAAGCGCATG AAGGTTTCCG ACCTGCCGGC GCAGGTCAGC
CTGTCGGATG TCGATGCGAT GATGCCCGAG CTCAAGCTGT CGGCCTTCGA GCAGGTGCAG
CTGGTGGCGC GGGTGTCGCG TGAGGGGAAT GCGACCAAGG GCGAGTGGAT CGGCCAACTG
GGTCCGGTCT CCAACACCGC ACGTGACACA CAGGCGCTGC TGATCGACAG CCGCGACGGG
CAGGCACAAT GA
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| Protein sequence | MIDFWLPAGL LLLTALAFLL IPVLRIRKLQ AEEDRTALNV TLYQERLQEL EAQRQVGVLD
DAQLEAGRAE AARELLADTE GVQRRSGVLG GKVPLVCALL VPVLGVALYL HWGALDQVEQ
ARNFAAQQPQ SIEEMTARLE QTVKQQPDSA EAWYFLGRTY MAQERAGDAA KAFEQAVNLA
GRAPELLGQW AQALYFAEGK QWNEQLQALT DEALKADPEE VTSLGLLGIA AYESQRYADA
VRYWERLVAV LPEQDPSRMA IAGGIERARQ QMGEGEQPGA AAEPGAKVHA LEVSVSLAPE
VQRQVQPDDA VFIFARALSG PPMPLAVKRM KVSDLPAQVS LSDVDAMMPE LKLSAFEQVQ
LVARVSREGN ATKGEWIGQL GPVSNTARDT QALLIDSRDG QAQ
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