| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2769 |
|---|
| Symbol | |
|---|
| ID | 5107565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3046105 |
|---|
| End bp | 3047880 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504019 |
|---|
| Product | glyoxylate carboligase |
|---|
| Protein accession | YP_001188256 |
|---|
| Protein GI | 146307791 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3960] Glyoxylate carboligase |
|---|
| TIGRFAM ID | [TIGR01504] glyoxylate carboligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.155295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.278101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGAA TGAGAGCAAT CGAGGCAGCC GTACTGGTGA TGCGCCGCGA AGGCGTCGAT
ACCGCGTTCG GCGTCCCCGG CGCTGCCATC AACCCCCTGT ATGCCGCCCT GAAGAAACTC
GGTGGCATCG ATCACGTCCT GGCCCGTCAC GTCGAAGGCG CTTCGCACAT GGCCGAGGGT
TACACCCGCA CCAATGCCGG CAATATCGGC GTGTGCATCG GTACCTCGGG CCCCGCCGGC
ACCGACATGG TCACCGGCCT GTACTCGGCC TCCGCCGACT CCATCCCGAT CCTGTGCATC
ACCGGCCAGG CGCCGCGTGC GCGCATGCAC AAGGAAGATT TCCAGGCGGT CGACATCACC
AGCATCGTCG GCCCGGTGAC CAAGTGGGCC ACCACCGTGA TGGAGCCCGG CCAGGTGCCG
CGCGCCTTCC AGCGTGCCTT CCATGAAATG CGCAGCGGCC GCCCCGGCCC GGTGCTGATC
GACCTGCCGT TTGACGTGCA GATGGCCGAG ATCGAGTTCG ATATCGACGC CTACGAGCCG
CTGCCGGTAG CCAAACCGAG CACCAGCCGC GTCCAGGCCG AGAAGGCCAT CGCCATGCTC
AACGAGGCCG AGCGCCCGCT GCTGGTCGCC GGTGGCGGCA TCTTCAACGC CGATGCGGCG
GACAAGCTGG TGGAGTTCGC CGAGCTGACC GGCGTGCCGG TGGTGCCGAC CCTGATGGGC
TGGGGCGCGA TCCCCGACGA TCACAAGCTG ATGGTCGGCA TGGTCGGCCT GCAGACCTCG
CACCGCTACG GCAACGCCAC CCTGCTCGCT TCCGACCTGG TGTTCGGCAT CGGCAACCGC
TGGGCCAACC GCCACACCGG CTCGGTGGAC GTCTACACCG AGGGCCGCAA GTTCATCCAC
GTCGACATCG AACCGACCCA GATTGGCCGC GTGTTCAACC CAGACCTGGG TATCGCCTCC
GACGCCGGCA ACGCGCTGGA CGCCTTCCTC GAGGTTGCCC GCGAGTGGAA AGCCGCCGGC
AAGCTGAAGG ACCGCAGCGC CTGGGTCGAA GCCTGCCGCG AGCGCAAGCG CACCCTGCAG
CGCAAGACCC ACTTCGACAA CGTGCCGGCC AAGCCGCAGC GCGTCTACGA AGAGATGAAC
GAAGCCTTCG GCAAGGACAC CTGCTACGTC AGCACCATCG GTCTGTCGCA GATCGCCGGC
GCGCAGTTCC TGCACGTGTA CAAGCCGCGC CACTGGATCA ACTGCGGTCA GGCCGGCCCG
CTGGGCTGGA CCATTCCGGC GGCTCTCGGC GTGGTCAAGG CCGACCCGAC CCGCAACGTG
GTCGCGCTGT CTGGCGACTA CGACTTCCAG TTCATGATCG AGGAGCTGGC CGTCGGCGCG
CAGTTCAACC TGCCGTATAT CCACGTGCTG GTGAACAACT CCTACCTGGG CCTGATCCGT
CAGGCACAGC GCGGCTTCGA CATCGATTAC TGCGTGCAGC TGGCGTTCGA GAACATCAAC
GCACCGGAGC TCAACGGGTA TGGCGTCGAC CACATCGCCG TGGTCGAGGG CCTGGGCTGC
AAGGCGATCC GCGTGTTCGA TCCGAACGAG CTGCAGAACG CCTTCGCCGA AGCCAAGCGC
CTGATGGCCG AGCACCGCGT GCCGGTGGTG GTGGAGGTGA TCCTGGAGCG TGTCACCAAC
ATCTCCATGG GCACCGAGAT CAACGCCATC AACGAGTTCG AGGAGCTGGC CGAGCGCGGC
GTCGACGCCC CGACCGCCAT CTCGCTGCTC GACTGA
|
|---|
| Protein sequence | MARMRAIEAA VLVMRREGVD TAFGVPGAAI NPLYAALKKL GGIDHVLARH VEGASHMAEG
YTRTNAGNIG VCIGTSGPAG TDMVTGLYSA SADSIPILCI TGQAPRARMH KEDFQAVDIT
SIVGPVTKWA TTVMEPGQVP RAFQRAFHEM RSGRPGPVLI DLPFDVQMAE IEFDIDAYEP
LPVAKPSTSR VQAEKAIAML NEAERPLLVA GGGIFNADAA DKLVEFAELT GVPVVPTLMG
WGAIPDDHKL MVGMVGLQTS HRYGNATLLA SDLVFGIGNR WANRHTGSVD VYTEGRKFIH
VDIEPTQIGR VFNPDLGIAS DAGNALDAFL EVAREWKAAG KLKDRSAWVE ACRERKRTLQ
RKTHFDNVPA KPQRVYEEMN EAFGKDTCYV STIGLSQIAG AQFLHVYKPR HWINCGQAGP
LGWTIPAALG VVKADPTRNV VALSGDYDFQ FMIEELAVGA QFNLPYIHVL VNNSYLGLIR
QAQRGFDIDY CVQLAFENIN APELNGYGVD HIAVVEGLGC KAIRVFDPNE LQNAFAEAKR
LMAEHRVPVV VEVILERVTN ISMGTEINAI NEFEELAERG VDAPTAISLL D
|
|---|
| |