| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2748 |
|---|
| Symbol | |
|---|
| ID | 5107544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3017566 |
|---|
| End bp | 3021054 |
|---|
| Gene Length | 3489 bp |
|---|
| Protein Length | 1162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640503998 |
|---|
| Product | condensin subunit Smc |
|---|
| Protein accession | YP_001188235 |
|---|
| Protein GI | 146307770 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.928329 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.900394 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGA AAAGCATCAA GCTGGCCGGC TTCAAGTCCT TCGTCGATCC GACGACGGTG
AGCTTTCCCA GCAACATGGC GGCGGTGGTC GGGCCCAACG GTTGCGGCAA GTCCAACATC
ATCGACGCCG TTCGCTGGGT CATGGGTGAA AGTTCGGCGA AGAACCTCCG TGGCGAGTCG
ATGACCGACG TCATCTTCAA CGGCTCCAAC ACGCGCAAGC CGGTGACCCA GGCCTCCATC
GAGCTGATCT TCGACAACAG CGACAACTCG CTGGTGGGCG AATACGCCGC CTTCGCCGAG
ATTTCCATCC GCCGCCGGGT GACTCGCGAC GGGCAGAACA CCTATTTCCT CAACGGCACC
AAGTGCCGTC GCCGCGATAT CACCGATATC TTCCTCGGCA CCGGCCTGGG GCCGCGCAGT
TACTCGATCA TCGAGCAGGG CATGATCAGC AAGCTGATCG AGGCCAAGCC CGAGGAGCTG
CGCAATTTCA TCGAGGAAGC CGCCGGTATC TCCAAGTACA AGGAGCGCCG CCGCGAGACC
GAGAACCGTA TCCGCCGCAC CCAGGAAAAC CTGGCGCGCC TGACCGACTT GCGCGAGGAG
CTGGAGCGCC AGCTCGAACG TCTGCACCGT CAGGCCCAGG CGGCGGAGAA GTACCAAGAA
TATAAGGCCG AGGAACGCCA GCTCAAGGCG CAACTGCTGG CCCTGCGCTG GCAGACCCTG
AACCAGCAGG TCGGCAGCCG CGAGCAGGTG ATCGGCGATC AGGAAGTGGC CTTCGAGGCC
CTGGTGGCCG AGCAGCGCAG CGCCGATGCC GCCATCGAGC GCCTGCGCGA TGGCCATCAT
GAGCTCTCCG AGCGCTTCAA CCTGGTACAG GGGCGCTTCT ATTCCGTGGG TGGCGATATC
GCCCGCGTCG AACAGAGCAT CCAGCACGGC CAGCAGCGCC TGCGCCAGTT GCAGGACGAC
CTGCGCGAGG CGGAAAAGGC GCGTCTGGAA ACCGAATCGC ACCTCGGCCA CGACCGCACC
CTGCTGGCCA CCCTGGGCGA AGATCTCGAG ATGCTCCTGC CCGAGCAGGA GCTGACTGCC
GCCGCTGCCG AGGAATCCGC CGCCGGCTTG GAAGAGGCCG AGGCCGCCAT GCATGGCTGG
CAGGAGCAGT GGGATGGTTT CAACCAGCGC AGCGCCGAGC CGCGTCGCCA GGCCGAGGTG
CAGCAGTCGC GCATCGCCCA GCTGGAGCAG AGCCTGGAGC GCCTGGCCGA ACGCCAGCGC
CGACTCAACG AAGAGCTCCA GCAATTGGCG GCCGACCCCG AAGACGCCGC CATTCTCGAA
CTGAACGAAC AGCTCGCCGC CGGCGAGCTG GAGCACGAAG CCCTGCAGCT GGCCGAAGAG
CAGCAGGCCG AGCGCCTGCA GCAATTGCGC GAGGACCTGC AGCAGGCCGG CCAGGCCCAG
CAGCAGGCTC AGGGTGAGCT GCAGCGGCTG AACGGCCGTC TGGCGTCACT GGAAGCCCTG
CAACAGGCCG CGCTCGATCC CGGGCAGGGC GCAGGCGACT GGCTGCGCGA GCAGGGCCTG
CTGCAGCGTC CGCGCCTGGC CGAAGGGCTG CGCGTGGAAG CCGGCTGGGA ACTGGCGGTG
GAAACCGTGC TCGGCGCTGA CCTGCAGGCG GTGCTGCTGG ACGATTTCGC CGGGCTGGAT
TTTGCCAGCC TGGAACAGGG CGAACTGCGC CTGGCCAGCC CGGGCACCGC TGGTGCCCGT
CGCGCCGGCA GCCTGCTGGA CAAGATCGAG TCGAGCCATG ATCTGTCGCC CTGGCTGGCC
AGTGTGCGCC CGGTGGAGTC GCTGGAGCAG GCTCTGGCGG CTCGCGCGCA GTTGGCCGAT
GGCGAAAGCC TGATCAGCCG CGACGGCTAC TGGGTCGGCC GGCATTTTCT GCGCGTACGC
CGCGCCGCCG AGGCGGACAG CGGCGTGCTG GCGCGCGGCC AGGAGTTGGA ACGCCTACAG
CTTGAGCGCG AGGAGCGCGA AGCGGCCCTG GCGCAACTGG ATGAACGCCT GCTGGCGCTG
CGCGACGAGC AGCGCCGTCA GGAGGAGCTG CGCGAGCAGA AACGCCGTCA GGGCCAGGAA
CTGGCGCGCC AGTTGAGCGA GCTGAAGGCG CGCCTGTCCG CCAGTCAGGC CAAGGCCGAG
CAGCTGGGCC TGCGTCGCTG CCGTCTGCAG GACGAACTGC AGGAAGCCGC CGAGCAGCGC
GAGATCGAGC AGGAGCAACT GGGCGAAGCG CGCCTGCAAT TGCAGGACGC ACTGGACGCC
ATGGCGCTGG ACAACGAGCA GCGCGAAAGC CTGCTGGCCA GCCGCGACAG CCTGCGCGAG
CGCCTCGATC GCGTGCGCCA GGAAGCGCGG CAGCACAAGG ATCACGCCCA CCAGCTGGCG
GTGCGGGTCG GTTCGCTCAA GGCGCAGCAC GACTCCACCC GCCAGGCGCT GGAGCGTCTG
GAGATGCAGG CCGAGCGCCT GCACGAGCGG CGTGAGCAGT TGTCGCTGAA CCTGGAAGAG
GGCGAGGCGC CGCTGGAAGA GCTGCGCATC AAGCTCGAAG AACTGCTCGA GCGGCGCATG
GCGGTGGACG AGGAGCTGCG CCAGGCGCGC CTGGCGCTGG AAGATGCCGA CCGCGAACTG
CGCGATGCCG AGAAGCGCCG TACCCAGGCC GAGCAGCAGG CGCAGATGCT GCGCAGCCAG
CTGGAGCAGC AGCGCATGGA CTGGCAGTCG CTCAACGTGC GGCGCAAGGC CTTGGCCGAC
CAGCTCGCCG AGGACAATTA CGACCTGCAC GGGGTGATCG CCACGCTGCC GGCCGAGGCC
ACGGAGAGCG CCTGGGAAGA AGAGCTGGAG CGCATGGCCA CGCGCATCGC CCGGCTCGGG
CCGATCAACT TGGCAGCCAT CGACGAGTAT CAGCAACAGT CCGAGCGCAA GCGCTATCTG
GATGCGCAGG ACGCCGACCT GGTCGAGGCC CTGGAAACCC TGGAAAACGT CATTCGCAAG
ATCGACAAGG AAACGCGCAA TCGTTTCAAG GACACCTTCG ATCAGATCAA TGGCGGTTTG
CAGGCACTCT TTCCAAAAGT TTTTGGTGGC GGCAACGCTT ATTTGGAACT CACCGGCGAA
GATTTACTCG ATACCGGTGT AACCATCATG GCGCGGCCCC CGGGCAAGAA GAACAGCACC
ATTCATTTGC TCTCCGGTGG AGAGAAAGCG CTGACGGCGT TGGCGCTGGT GTTTTCCATC
TTCCAGCTCA ATCCGGCGCC GTTCTGCATG TTGGATGAAG TGGATGCGCC GCTGGACGAC
GCCAACGTGG GTCGCTATGC GCGTCTGGTC AAGGAGATGT CGGCGACGGT GCAGTTCATC
TACATCACCC ACAACAAGAT CGCCATGGAA ATGGCCGATC AACTGATGGG GGTCACCATG
CACGAGCCGG GCTGCTCGCG GCTGGTGGCG GTGGATGTCG AAGAGGCGCT GGCGATGGTG
GAGAGCTGA
|
|---|
| Protein sequence | MRLKSIKLAG FKSFVDPTTV SFPSNMAAVV GPNGCGKSNI IDAVRWVMGE SSAKNLRGES
MTDVIFNGSN TRKPVTQASI ELIFDNSDNS LVGEYAAFAE ISIRRRVTRD GQNTYFLNGT
KCRRRDITDI FLGTGLGPRS YSIIEQGMIS KLIEAKPEEL RNFIEEAAGI SKYKERRRET
ENRIRRTQEN LARLTDLREE LERQLERLHR QAQAAEKYQE YKAEERQLKA QLLALRWQTL
NQQVGSREQV IGDQEVAFEA LVAEQRSADA AIERLRDGHH ELSERFNLVQ GRFYSVGGDI
ARVEQSIQHG QQRLRQLQDD LREAEKARLE TESHLGHDRT LLATLGEDLE MLLPEQELTA
AAAEESAAGL EEAEAAMHGW QEQWDGFNQR SAEPRRQAEV QQSRIAQLEQ SLERLAERQR
RLNEELQQLA ADPEDAAILE LNEQLAAGEL EHEALQLAEE QQAERLQQLR EDLQQAGQAQ
QQAQGELQRL NGRLASLEAL QQAALDPGQG AGDWLREQGL LQRPRLAEGL RVEAGWELAV
ETVLGADLQA VLLDDFAGLD FASLEQGELR LASPGTAGAR RAGSLLDKIE SSHDLSPWLA
SVRPVESLEQ ALAARAQLAD GESLISRDGY WVGRHFLRVR RAAEADSGVL ARGQELERLQ
LEREEREAAL AQLDERLLAL RDEQRRQEEL REQKRRQGQE LARQLSELKA RLSASQAKAE
QLGLRRCRLQ DELQEAAEQR EIEQEQLGEA RLQLQDALDA MALDNEQRES LLASRDSLRE
RLDRVRQEAR QHKDHAHQLA VRVGSLKAQH DSTRQALERL EMQAERLHER REQLSLNLEE
GEAPLEELRI KLEELLERRM AVDEELRQAR LALEDADREL RDAEKRRTQA EQQAQMLRSQ
LEQQRMDWQS LNVRRKALAD QLAEDNYDLH GVIATLPAEA TESAWEEELE RMATRIARLG
PINLAAIDEY QQQSERKRYL DAQDADLVEA LETLENVIRK IDKETRNRFK DTFDQINGGL
QALFPKVFGG GNAYLELTGE DLLDTGVTIM ARPPGKKNST IHLLSGGEKA LTALALVFSI
FQLNPAPFCM LDEVDAPLDD ANVGRYARLV KEMSATVQFI YITHNKIAME MADQLMGVTM
HEPGCSRLVA VDVEEALAMV ES
|
|---|
| |