| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2746 |
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| Symbol | ligA |
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| ID | 5107897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3014153 |
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| End bp | 3016513 |
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| Gene Length | 2361 bp |
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| Protein Length | 786 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503996 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001188233 |
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| Protein GI | 146307768 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0339353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACG CCGCCCAACG TATTTCCGAA CTGCGCAACG AACTGGATGC GCACAACTAC
CGTTACTACG TGCTGGACGA ACCGAGCGTG CCCGACGCCG AGTACGACCG TCTGTTCCGC
GAGCTGCAGG CGCTGGAAGC CGAGCATCCG GAGCTGGTCA CGCCCGAGTC GCCGACCCAG
CGCGTCGGTG GTGAGGCGCT CAGCGCCTTC GGCGAGGTGC GCCATGAAGT GCCGATGCTC
AGCCTCGGCA ATGCCTTCGA GGAAGACGAC CTGCGCGCCT TCGACCGCAG CGTACAGAGC
GGCCTGGGCC TCGCTGGCGG GGACCTGTTC GGCGGCGGCG CCGAGGTCGA GTACAGCTGC
GAACCCAAGC TCGATGGCCT GGCCGTCAGC CTGCGCTACG AGAATGGCCA ACTGGTGCGC
GGCGCCACTC GCGGCGATGG CAGCACCGGC GAGGACATCA GCGCCAATGT GCGCACCATC
CGCAACGTGC CGCTCAAGCT GCAGGGCGAG GGCTGGCCGC AGGTGCTGGA AGTGCGTGGC
GAAGTATTCA TGCCCAAGGC CGGCTTCGAG GAGCTCAATG CACGCCAGGC CGAGGCCGGC
GGCAAGACCT TCGCCAACCC GCGCAACGCC GCCGCCGGCA GCCTGCGCCA GCTCGACCCG
AAGATCACCG CCAGCCGCCC GCTGGAGTTC TGCTGCTATG GCGTTGGCCA GGTCAGCGGC
GAGCTGCCGG GCACTCAAGT GGCCATGTTG CAGCAGCTCA AGGCCTGGGG CATTCCGATC
AGTCGCGAGC TGAAACTGGC CAAGGGTGTG GAGGCCTGCC TGGACTACTA CCGCGATATC
GGTCAGCGGC GCATGAGCCT GGCCTATGAC ATCGATGGCG TGGTGTTCAA GGTCAACAAT
ATCGAGGATC AGCAGCAGCT GGGCTTCCGC GCGCGCACGC CGCACTGGGC CATCGCCCAC
AAGTTCCCTG CGCAGGAAGA GCTCACCGAA CTGCTCGACG TGGAGTTTCA GGTGGGGCGC
ACCGGCGCAG TCACCCCGGT GGCGCGGCTC AAGCCGGTCA AGGTGGCGGG CGTGATGGTG
GCCAACGCCA CCCTGCACAA CATGGACGAA GTGGCGCGCC TGGGTGTGAT GATCGGCGAC
ACGGTGATCA TCCGCCGCGC CGGCGACGTG ATCCCGCAGG TGATGGCGGT GGTGCCCGAG
CGTCGCCCGG CCGATGCGCG GCCCGTACAT ATCCCCGAGC AGTGCCCGGT GTGCGGCTCG
GCGGTGGAGC GCACGCAACT GATCAAGCGC AGCAAGGGCA AGGCCAGCGT CAGCGAAGGT
TCGGTGTATC GTTGCGTCGG CCGCCTGAGC TGCCAGGCGC AGCTCAAGCA GGCGATCATC
CATTTCGTCT CGCGTCGCGC CATGGATATC GAAGGCCTCG GCGACAAGAC CATCGAGCAA
CTGGTGGACG AGAAGCTGAT CGGCTCGCCG GCCGACCTGT ACAAACTCAC TTATGAGCAA
ATCATCGGTC TGGAAGGCTT TGCCGAGGTT TCCAGCAACA AGCTGCTGGC AGCCATCGAG
AACAGCAAGC GGCCGAGCCT GGCGCGTTTC ATCTATGCCC TCGGCATTCC CGACGTGGGC
GAGGAAACGG CCAAGGTGCT GGCCCGTTCG CTGGCCTCGC TGGAGCGTGT GCGTCAGGCG
CTGCCCGAGG TGCTCACCTA CCTGCCGGAT ATCGGCCTGG AAGTGGCCCA CGAGATCCAC
AGCTTCTTCG AGGATGCGCA CAACCAGCAG GTGATCAGCG CCTTGCTCGG CGAGTGCGGC
CTCGAGTTGC AGGACGAGGG CGAGCTGAGC GCCGAGTTCT CCGCCGTGGC CACGCTCGGC
GGCATGCTCG ACAAGCTGAA CATTCCCACT GTCGGCCCGG GAGCGGCGCA GAAGCTGGCC
GAGCGCTTCG GCAGCCTGGA AGGTGTGCTC AATGGCGACT GGCTGGACAT GCGCCAGGCA
CTGCCCGAGA GGCAGGCCAA GGCGGTGCGC GAGTTCTTCG ACGAGACGGC CAACGCCCAG
CGTGCCCGCG CCATCGAGCA GCAGCTGCGC GAGTTCGGCA TGCACTGGGA AAGCGAGAAG
AAGGTCGCCG AAGGCCTGCC CCTGGCTGGC CAGACCTGGG TGCTGACCGG CACCCTGGAG
GTGATGAGCC GCGACGTGGC CAAGGAAAAG CTGGAAAGCC TGGGCGCCAA GGTGGCCGGT
TCCGTCTCGG CCAAGACCCA CTGCGTGGTC GCCGGCCCCG GCGCCGGCTC GAAGCTGGCC
AAGGCCAGCG AGCTGGGGGT GAAGGTGCTG GATGAAGCGC AGTTTCTCGA GCAGCTCAAG
AGCTACGGCA TTGAAGCGTA G
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| Protein sequence | MTDAAQRISE LRNELDAHNY RYYVLDEPSV PDAEYDRLFR ELQALEAEHP ELVTPESPTQ
RVGGEALSAF GEVRHEVPML SLGNAFEEDD LRAFDRSVQS GLGLAGGDLF GGGAEVEYSC
EPKLDGLAVS LRYENGQLVR GATRGDGSTG EDISANVRTI RNVPLKLQGE GWPQVLEVRG
EVFMPKAGFE ELNARQAEAG GKTFANPRNA AAGSLRQLDP KITASRPLEF CCYGVGQVSG
ELPGTQVAML QQLKAWGIPI SRELKLAKGV EACLDYYRDI GQRRMSLAYD IDGVVFKVNN
IEDQQQLGFR ARTPHWAIAH KFPAQEELTE LLDVEFQVGR TGAVTPVARL KPVKVAGVMV
ANATLHNMDE VARLGVMIGD TVIIRRAGDV IPQVMAVVPE RRPADARPVH IPEQCPVCGS
AVERTQLIKR SKGKASVSEG SVYRCVGRLS CQAQLKQAII HFVSRRAMDI EGLGDKTIEQ
LVDEKLIGSP ADLYKLTYEQ IIGLEGFAEV SSNKLLAAIE NSKRPSLARF IYALGIPDVG
EETAKVLARS LASLERVRQA LPEVLTYLPD IGLEVAHEIH SFFEDAHNQQ VISALLGECG
LELQDEGELS AEFSAVATLG GMLDKLNIPT VGPGAAQKLA ERFGSLEGVL NGDWLDMRQA
LPERQAKAVR EFFDETANAQ RARAIEQQLR EFGMHWESEK KVAEGLPLAG QTWVLTGTLE
VMSRDVAKEK LESLGAKVAG SVSAKTHCVV AGPGAGSKLA KASELGVKVL DEAQFLEQLK
SYGIEA
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