| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2727 |
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| Symbol | |
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| ID | 5107878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2993310 |
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| End bp | 2994266 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640503971 |
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| Product | dihydrouridine synthase, DuS |
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| Protein accession | YP_001188214 |
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| Protein GI | 146307749 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.165844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.161387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATCG CCCTGGCACC CATGGAGGGG CTGGTCGACG AGATCCTGCG CGACGTACTG
ACCCGCATCG GCGGTATCGA CTGGTGCGTC ACCGAGTTCA TTCGCGTCAG CGACCGCCTG
CTGCCGGCTG CCACCTACCA CAAGCTCGCC CCCGAGCTGT TCGCCGGTGC CCGCACCCAG
GCGGGCACAC TGATGCGCGT GCAGTTCCTC GGCTCCGATC CGCAGTGTCT GGCCGACAAC
GCCGCCTTTG CCTGTGGCCT GGGCGCGCCG GTGATCGACC TCAACTTCGG CTGCCCGGCC
AAGACGGTGA ACAAGTCGCG CGGCGGCGCC GTGCTGCTCA AGGAGCCGGA GTTGCTCCAC
GCGATCGTGC GCGAGGTGCG GCGCACCGTG CCGGCCGAGA TTCCGGTAAC GGCCAAGATG
CGCCTGGGCT TCGAGGACAA GAGCGTCGCG CTGGACTGTG CGCGGGCGCT CGCCGAGGGC
GGCGCGAGCC AGATCGTGGT GCATGCGCGT ACCAAGGTCG AAGGGTACAA GCCGCCGGCG
CACTGGGAGT GGGTGGCGCG GGTGCAGGAG GTGGTGGCCG TGCCGGTGTT TGCCAATGGC
GAGGTGTGGA CGCTGCAGGA CTGGCGTCGT TGCCGCGAGA TCAGCGGCGT GGACGACATC
ATGCTCGGGC GCGGGCTGGT CTCGCGTCCG GGCCTGGCGC GACAGATCGC AGCGGTCAGG
GCGGGTGAAC AGCCGCAGGA AATGAGCTGG GAGGAACTGC AGCCGCTGCT GCAGGACTTC
TGGCGGCAGG CGCGGCGCAA GCTGGCACCG CGTTATGCGC CGGGGCGCCT GAAGCAGTGG
CTGGCGATGC TTACGCGCAC CTATCCCGAG GCCGTGACGT TGTTTGCCGA GGTTCGTCGC
GAGCAGGATT GCGAGCGGAT CGACAGGCTG CTCGGGGCGG TAGCGGCGCC TGCATAG
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| Protein sequence | MQIALAPMEG LVDEILRDVL TRIGGIDWCV TEFIRVSDRL LPAATYHKLA PELFAGARTQ
AGTLMRVQFL GSDPQCLADN AAFACGLGAP VIDLNFGCPA KTVNKSRGGA VLLKEPELLH
AIVREVRRTV PAEIPVTAKM RLGFEDKSVA LDCARALAEG GASQIVVHAR TKVEGYKPPA
HWEWVARVQE VVAVPVFANG EVWTLQDWRR CREISGVDDI MLGRGLVSRP GLARQIAAVR
AGEQPQEMSW EELQPLLQDF WRQARRKLAP RYAPGRLKQW LAMLTRTYPE AVTLFAEVRR
EQDCERIDRL LGAVAAPA
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