| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2725 |
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| Symbol | |
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| ID | 5107876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2990402 |
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| End bp | 2992555 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503969 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001188212 |
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| Protein GI | 146307747 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.172089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGAT CCACTGACCT GCCCCCACGC CTGCCGCACA TCCCGGCCAA GGATCCTGCC
GAGTTCGAGC AGACCTGGCG TGATGCGCCG CGACTGCTGG CGGCGCTCAA CGGGGCCCGA
CTGGGAGCCT GGTACTGGGA CATCGACAGT GGCCAGGTCA GCTGGTCGCG CGGGGCCCAG
GCCCTGTTCG GCCTGGACCC CGAACGCCCG CTGAGCAGCA GCGTCGAGTA CATCGAACTG
ATCCCCGACG AAGAACGGGG TGCGGTGCTG CGCCAGTTCA ACGCCATTCT CGCCGGCAAC
GACGAAGGCC GCGCGCTGCG CCACCGCATC CGCTGGCCGG ACGGCAGCCT GCACTGGCTG
GAGATCAGCG GCAGCCTGCA GCGCGAGGCA GACGGCCGGC GACGCATGTT CGGCGTGATT
CGCGACATCA CCCAGCAGCA GGTTCGCGCC GATGCCTTGC GCGCCTCCGA GGAGAAGTTC
GCCAAGGCAT TCCACTCCAG CCCGGACGCC ATCACCATCA CCGAGCGCGA CACCGCGCGC
TACATAGAGG TCAACGAGGG CTTCACCCGC CTCACCGGCT ACAGCTCGGC CGAAGTGATC
GGGCGCACGG CCTTCGAGCT CAACATCTGG GCCTTTCCCG AGGAGCGCGC AGTGATGCTC
GATCACCTGG CCAAGAACGG CCAGGTGCTG CACATGGAAA TGCACGGGCA ACACCGCAAT
GGCGATGTGC GCCTGGTGGA GGTTTCGGTT CAGCCGCTGG ATCTCAATGG CAGCTCCTGC
CTGCTGCTCA CCGCCCGCGA CATCAGCGAG CTGAAACAGG CGCAGGCTCA GGTCCAGCAC
CTGGCCTATC ACGATGCGCT GACCAACCTG CCCAACCGCG CCATGCTGAT CAATCGCCTG
ACCCAGCAGA TCGCGCTACT CAAGCGTCAC GACATGCGCA GCGCCCTGCT GTTCATCGAC
CTGGATCACT TCAAACACAT CAACGACTCG CTCGGCCACC CGGTCGGCGA TGCGGTACTG
CGCCTGGTAA CCGCCCGCCT GGAAGCCACC GTGCGCCTCG AAGACACCGT GGCGCGCCTG
GGGGGCGACG AGTTCGTGGT GCTGCTCTGC GGCCTGCAGG GCAAGCGCTC GGAAGTCACC
CGTCAGGTCC GCCAGGTCGC CGAGAAGCTG CGCCACTTGC TGGCCGAGCC CATGCTGCTG
GACGGGCACC ATCTGCAGGT CACACCGAGC ATCGGCATCG CCCTGATTCC CGACCACGGC
GAAACCCCCG CCGACCTGCT CAAGCGCGCC GACATCGCCC TATATCGGGC CAAGGATTCG
GGCCGCAATG CCATTCAGCT GTTTCGCAGC ACCATGCAGG ACGCCGTCAG CGCCCGCCTG
CGTCTGGAGA ACGACCTGCG CCTGGCACTG GCCCGCGGCG AGTTCGAACT GCATTTCCAG
CCCCAGGTCG ATGCCCGCGA CGGCCAGGTG GTCGGCGCCG AAGCCCTGCT GCGCTGGCAA
CACCCTCAGC ACGGTCCGCA GTCGCCGGCG CAGTTCATTC AGGTGTTGGA AGAAAGCGGG
CTGATCATCG AGGTCGGTGG CTGGGTGCTG ACCGAAGCCT GTCACCTCTG CGCCCGCCTG
CTGGCCGACA AGCTGATCGA CGCCGAGCGC TTCAGCCTGT GCGTCAACAT CAGCCCCAGG
CAGTTCCGCC AGCACGATTT CGTCGAGCGC GTGGCCGGCT GCCTGCGTAC CAGCCAGCTG
CCCCACGCCA TGCTCAAACT GGAAATCACC GAAGGCATCG TGATCCAGAA CATCGACGAC
ACCGTCGGCA AGATGCTGCG CCTGAAAAAA CACGGGGTCA GCTTCGCCAT GGACGATTTC
GGTACCGGCT ACAGCTCGCT GACCTACCTC AAGCGCCTGC CGGTGGACAT GTTGAAAATC
GATCAGTCGT TCGTGCGCGA TGCCACCAGC GACCCCAACG ACGCCGGCAT CATTCGTGCC
ATCGTCGCCA TGGCGCGCAG CCTGGGTCTG GGGCTGATCG CCGAGGGCGT CGAGCAGCAG
GAACAGCTGG ACTTCCTGCA AGCGCAGGAC TGCCACCTGT ATCAGGGCTA CCTGTTCAGC
AAGCCAGTGC CGGAGGACGC CTTCCGCGCC CTGCTCGGCC AACACCGCAG CTGA
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| Protein sequence | MARSTDLPPR LPHIPAKDPA EFEQTWRDAP RLLAALNGAR LGAWYWDIDS GQVSWSRGAQ
ALFGLDPERP LSSSVEYIEL IPDEERGAVL RQFNAILAGN DEGRALRHRI RWPDGSLHWL
EISGSLQREA DGRRRMFGVI RDITQQQVRA DALRASEEKF AKAFHSSPDA ITITERDTAR
YIEVNEGFTR LTGYSSAEVI GRTAFELNIW AFPEERAVML DHLAKNGQVL HMEMHGQHRN
GDVRLVEVSV QPLDLNGSSC LLLTARDISE LKQAQAQVQH LAYHDALTNL PNRAMLINRL
TQQIALLKRH DMRSALLFID LDHFKHINDS LGHPVGDAVL RLVTARLEAT VRLEDTVARL
GGDEFVVLLC GLQGKRSEVT RQVRQVAEKL RHLLAEPMLL DGHHLQVTPS IGIALIPDHG
ETPADLLKRA DIALYRAKDS GRNAIQLFRS TMQDAVSARL RLENDLRLAL ARGEFELHFQ
PQVDARDGQV VGAEALLRWQ HPQHGPQSPA QFIQVLEESG LIIEVGGWVL TEACHLCARL
LADKLIDAER FSLCVNISPR QFRQHDFVER VAGCLRTSQL PHAMLKLEIT EGIVIQNIDD
TVGKMLRLKK HGVSFAMDDF GTGYSSLTYL KRLPVDMLKI DQSFVRDATS DPNDAGIIRA
IVAMARSLGL GLIAEGVEQQ EQLDFLQAQD CHLYQGYLFS KPVPEDAFRA LLGQHRS
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