| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2701 |
|---|
| Symbol | |
|---|
| ID | 5107852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2962991 |
|---|
| End bp | 2964499 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503945 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001188188 |
|---|
| Protein GI | 146307723 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.193287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0380236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCAGTAC ACTTCTGTAA CAATCGGCTA CTGTTATGGT TCAGTGCTCT GGAGGAAATC
GTCGTGACCA ACCTGTTGCT CTACCAACGC ATCGCCCAGC AGTTGGCCGA AGATATCCGT
CGTGGCGTCT ACCAGCCGGG CGAGCGCGTG CCCTCGGTGC GCAAGATGAG TGCGCAGCTC
AATGTCAGCC ACGCCACCGT GCTGCAGGCC TACGCCAACC TCGAGGACCA GGGACTGATC
CGCGCGCGGC CGCAGTCCGG CTTCTACGTG CACCAGACAC CGGCGCTGAC CGCACCGACC
CCGGATATCG CCAAGGTCGA GCGGCCAGGT CTGGTCACCC GTGCCAGCAT CATCAATCAG
GTGCTCACCG AGTCGCGTCG CGAAGGCGTA TTCCCGCTCG GGGCGGCGGT GCCGCATGTC
GATTACCTGC CGGTGCGCGC GCTGCACCAG CAACTGGCCA AGGTCACGCG GTTCCACAGT
CCGCGCGCCT TCAGCTACAT GTTCAGCCCC GGCTTCGAGC CGCTGCGCCG CCAGGTGGCG
ATCCGCATGC GCGATGCCGG CGTGGTGGTC GACCCCTCCG AGGTGGTGGT CACCCACGGC
TGCGTCGATG CGCTGCAGAT GAGCCTGCGC GTGCTGACCA AGCCGGGCGA TCTGATCGCG
GTGGAGTCGC CGACCTACTA CGGCCTGCTG CAGCTGGCCG ATCTGCTGGG GCTCAAGGTC
ATCGAGATCC CGTGCGATCC GACCACCGGC ATCAGCCTCG AAGCCCTGCA ACTGGCCGCC
AACCAGTGGC CGATCAAGGC CCTGGTGCTG ACCGCGCGGC TGTCCAACCC GCTGGGCGGC
ACCATCCCCG AGGAGCGTCA GCGCCAGTTG CTGCGCCTGG CCGGCGATTA CGATTTCCAG
ATCGTCGAGG ACGACATCTA CGGCGAGCTG ATGTTCGAGC AGGGCCCGAC CAAGGCGCTC
AAGTCGCATG ATCGCGACAG CCGAGTGATC TACTGCTCGA GCTTCTCCAA GACGCTGTCG
CCGGGCGTGC GCATCGGCTG GATCGTCGCT GGCAAGTATC AGGACGAGAT TCAGCGCCTG
CAGACCTTCT CCACCCATTC GGCGTGCAGC GTCACCCAGA TGGCGGTGGC GGCCTATCTG
GAGAATGGCG GCTATGACCG TCACCTGCGG CATATCCGTC AGGAGTACCG CAAGAACCTC
AGCGCCTTCC AGCTGGCGGT GCAGCAGTAC TTCCCGGCCG GCACGCAGAT GACCCGACCC
AAGGGCGGCT TCATTCTCTG GGTCAGTCTG CCGGCGCGGG TCAACACCAA GGACCTGCAC
GTGCGCGCGC TGCAGCAGGG CATCTCGATC GCACCGGGAC TGATCTTCAG CAATACCGAG
CAGTTCAACC ACTGCGTGCG GCTCAACTGC GGCATCCCGT GGAATCGCGA GGCCGAAAGG
GCGCTGATGA CCCTGGGCAT GCTGGCCACC CAGCTGTGTC AGGAGGCAGG CGGTTCGTGG
GAGGGCTGA
|
|---|
| Protein sequence | MPVHFCNNRL LLWFSALEEI VVTNLLLYQR IAQQLAEDIR RGVYQPGERV PSVRKMSAQL
NVSHATVLQA YANLEDQGLI RARPQSGFYV HQTPALTAPT PDIAKVERPG LVTRASIINQ
VLTESRREGV FPLGAAVPHV DYLPVRALHQ QLAKVTRFHS PRAFSYMFSP GFEPLRRQVA
IRMRDAGVVV DPSEVVVTHG CVDALQMSLR VLTKPGDLIA VESPTYYGLL QLADLLGLKV
IEIPCDPTTG ISLEALQLAA NQWPIKALVL TARLSNPLGG TIPEERQRQL LRLAGDYDFQ
IVEDDIYGEL MFEQGPTKAL KSHDRDSRVI YCSSFSKTLS PGVRIGWIVA GKYQDEIQRL
QTFSTHSACS VTQMAVAAYL ENGGYDRHLR HIRQEYRKNL SAFQLAVQQY FPAGTQMTRP
KGGFILWVSL PARVNTKDLH VRALQQGISI APGLIFSNTE QFNHCVRLNC GIPWNREAER
ALMTLGMLAT QLCQEAGGSW EG
|
|---|
| |