| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2616 |
|---|
| Symbol | |
|---|
| ID | 5107926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2878437 |
|---|
| End bp | 2878985 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640503860 |
|---|
| Product | adenine phosphoribosyltransferase |
|---|
| Protein accession | YP_001188104 |
|---|
| Protein GI | 146307639 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0503] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins |
|---|
| TIGRFAM ID | [TIGR01090] adenine phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0092322 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.996002 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCG ACGAATTCAG CATCAAGACC CTGATCCGCC CGGTACCGGA CTTCCCCAAA
CCGGGCGTGG TCTTCCGCGA CATCACCCCG CTGTTCCAAT CACCGCGTGC GCTGCGCATG
GTCGCCGACA GTTTCATCCA GCGTTACGTG GAGGCCGAGT TCAGCCATAT CGGCGCAATG
GACGCGCGCG GTTTCCTGAT CGGCTCGATC ATCGCCTACG AACTGAACAA GCCGCTGATC
CTGTTCCGCA AGCAGGGCAA GCTGCCGGCG GATGTTCTCA GCGAGAGCTA CCAGACCGAA
TACGGCGAAG CCTTTCTCGA AGTGCATAGC GACAGCCTGT GCGAGGGCGA CTCGGTACTG
ATCTTCGATG ACCTGATCGC TACCGGCGGC ACCCTGATCG CCGCGGCCAA CCTGGTACGG
CGCATGCGCG CCAGCGTATT CGAGGCCGCC GCGATCATCG ACCTGCCGGA GCTGGGTGGC
TCGCAGAAGC TGCAGGACGC GGCGATTCCC ACCTTCACCC TGACTGCCTT CGCCCTCGAC
GACCGCTAG
|
|---|
| Protein sequence | MIFDEFSIKT LIRPVPDFPK PGVVFRDITP LFQSPRALRM VADSFIQRYV EAEFSHIGAM
DARGFLIGSI IAYELNKPLI LFRKQGKLPA DVLSESYQTE YGEAFLEVHS DSLCEGDSVL
IFDDLIATGG TLIAAANLVR RMRASVFEAA AIIDLPELGG SQKLQDAAIP TFTLTAFALD
DR
|
|---|
| |