| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2610 |
|---|
| Symbol | |
|---|
| ID | 5107920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2872173 |
|---|
| End bp | 2874581 |
|---|
| Gene Length | 2409 bp |
|---|
| Protein Length | 802 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640503854 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_001188098 |
|---|
| Protein GI | 146307633 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.116821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.696286 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCC CCACTCCCTG CTACCACTGT GGCCTGCCGG TGCCTGCCGG CAGCAGCTTC
CACGCCGAGG TACTCGGCAC GACCCGCGAG ATGTGCTGCC CCGGTTGCCA GGCGGTGGCC
GAGGCCATAG TCGCCGGCGG CCTGGAACAC TACTACAAGC ACCGCAGCGA GAACGCCGCC
AACCCACAGG CCCTGCCTCA GGCCCTACCG GACGAGCTGG CGCTGTACGA CCGCAGCGAG
GTGCAGCAGC CCTTCGTCCA GCAGGACGGC GAGCTGAGCG AAACCCAACT GCTCATCGAA
GGCATCAGTT GCGCCGCCTG CGGCTGGCTG ATCGAGAAAC ACCTGCGCGG CGTGCCCGGC
GTGGCCGAGG CGCATCTGAA CCTGTCCAAT CACCGCCTGC AGGTGCGCTG GCAGGACAGC
CAGATTCCCC TGAGCAAGCT GCTCGCCGAA TTGCGCCGCA TCGGCTACGC CGCCCACCCC
TGGCAACCCG ACGAAGCGGC CGAACGCCTG GCCGCGGAGA ACCGCCGGCG CATGCGCGAA
CTGGGCGTGG CCGGCCTGCT GTGGATGCAG GTGATGATGG CGACCATGGC CACCTGGCCG
GAATTCAACG TCGACCTGTC ACCGGAGCTG GACAAGATCC TGCGCTGGAC CAGCCTGTTC
CTCACCACCC CCATCGTCTT CTATTGCTGC GGCCAGTTCT TCCGCGGCGC CCTGCGTGAC
CTGCGCACCC GCCACCTGAC CATGGACGTG TCCGTTTCGC TGGCCATCGG CGGCGCCTAC
GTGGCCGGCA TCTGGTCGAC CATCACCGGT CAGGGCGAGC TGTATTTCGA CGCTGTGGGC
ATGTTCGCCC TGTTCCTGCT TGCTGGTCGC TATCTGGAGC GCCGCGCCCG CGAACGCACG
GCGGCGGCCA CGGCGCAACT GGTCCAGCTG CTGCCGGCGT CATGCCTGCG CCTGGAGGCC
GACGGCCAGA GCCAGCGCAT CCTGCTCAGC GAGCTGCGCA TCGGCGAGCA GGTGCTGGTG
CAGCCCGGCT CGCTGATCCC GGCCGACGGT CAGGTGCTGG CCGGTCAATC CAGCGTCGAC
GAATCGCTGC TGACCGGCGA ATACCTGCCG CAGCCGCGCG GCATCGGCGA CGGCGTCACC
GCCGGCACGC TGAATGTCGA AGGCCCGCTG ACCGTACAGG TGCAGGCCCT GGGCGACGCC
ACCCGCCTGT CCGCCATCGT CCGCCTGCTG GAGCGTGCGC AGAGCGAAAA GCCGCGCCTG
GCCGAGATCG CCGACCGGGT CGCGCAATGG TTTCTGCTGT TCATCCTGAT CGCCGCGGCG
GTGGTGGGCC TGGCCTGGTG GCAGATCGAT TCCGGCCGCG CCTTCTGGGT GGTGCTGGCG
TTGCTGGTGG CTACCTGCCC CTGCGCCCTC GCCCTGGCCA CGCCCACGGC ACTGACCACC
GCCACCGGCA GCCTGCACAA GCTGGGCATG CTGCTGACGC GCGGCCATGT GCTCGAAGGC
CTCAACCAGA TCGACACCCT GGTGCTGGAC AAGACCGGCA CCCTCACCGA GGGGCGCCTG
ACGCTCAAGG CCATCCACCC GTTGCGCGAA CTCGACGAAG GCGCCTGCCT GGCGCTCGCC
GCAGCGCTGG AGAATCGCTC CGAGCATCCC ATCGCGCGCG CGTTCAGCCA GGCGCCGCAT
GCCGCGGAAT CCGTCGACAG CCATCCCGGC CAGGGCCTGC AGGGCCGCGT CGAAGGCCGC
CTGCTGCGTA TCGGCGAGGC GACTTTCGTC TGCGCCCTGA GCGGCCAAGC CGTGCCGTCG
ATTGCCGGCG AGCACGGCCA ATGGCTGCTG CTGGGCGACG AGCAAGGACC GCTGGCCTGG
TTCGTCCTTG ACGACCGCCT GCGCGACGAC GCCGCGCAGC TGATCGCCGC GGCGCGCGCC
CGGGGCTGGC ACATCCACCT GCTGTCCGGC GACAGCTCGC CGATGGTCGG CGAAGTGGCG
CGCCAGCTCG GTATCGAGGA CGCGCGCGGC GGCCTGACCC CGGATGCCAA GCTGGCGGTG
CTCAAGCAGT TGCACGGCGA GGGTCGCCGC GTGCTGATGC TGGGCGACGG GGTCAACGAC
GTGCCGGTAC TGGCCGCCGC CGATATCAGC GTGGCCATGG GCTCGGCGTC CGATCTGGCC
AAGACCAGCG CCGATGCGGT GCTGCTGTCC AACCGCCTGA GCAGCCTGGT GGAAGGGCTG
AAGCTTGCCC GGCGCACGCG GCGCATCATC ATCGAGAACC TGTCCTGGGC GACTCTGTAC
AATGGCCTGG TGCTGCCCTT CGCCGCGCTG GGCTGGATCA CGCCGATCTG GGCCGCCGTG
GGCATGTCGC TCAGCTCGCT GCTGGTGGTA CTCAACGCGC TGCGCCTGAG CCGCACCCCG
AATACCTAG
|
|---|
| Protein sequence | MPAPTPCYHC GLPVPAGSSF HAEVLGTTRE MCCPGCQAVA EAIVAGGLEH YYKHRSENAA
NPQALPQALP DELALYDRSE VQQPFVQQDG ELSETQLLIE GISCAACGWL IEKHLRGVPG
VAEAHLNLSN HRLQVRWQDS QIPLSKLLAE LRRIGYAAHP WQPDEAAERL AAENRRRMRE
LGVAGLLWMQ VMMATMATWP EFNVDLSPEL DKILRWTSLF LTTPIVFYCC GQFFRGALRD
LRTRHLTMDV SVSLAIGGAY VAGIWSTITG QGELYFDAVG MFALFLLAGR YLERRARERT
AAATAQLVQL LPASCLRLEA DGQSQRILLS ELRIGEQVLV QPGSLIPADG QVLAGQSSVD
ESLLTGEYLP QPRGIGDGVT AGTLNVEGPL TVQVQALGDA TRLSAIVRLL ERAQSEKPRL
AEIADRVAQW FLLFILIAAA VVGLAWWQID SGRAFWVVLA LLVATCPCAL ALATPTALTT
ATGSLHKLGM LLTRGHVLEG LNQIDTLVLD KTGTLTEGRL TLKAIHPLRE LDEGACLALA
AALENRSEHP IARAFSQAPH AAESVDSHPG QGLQGRVEGR LLRIGEATFV CALSGQAVPS
IAGEHGQWLL LGDEQGPLAW FVLDDRLRDD AAQLIAAARA RGWHIHLLSG DSSPMVGEVA
RQLGIEDARG GLTPDAKLAV LKQLHGEGRR VLMLGDGVND VPVLAAADIS VAMGSASDLA
KTSADAVLLS NRLSSLVEGL KLARRTRRII IENLSWATLY NGLVLPFAAL GWITPIWAAV
GMSLSSLLVV LNALRLSRTP NT
|
|---|
| |