| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2604 |
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| Symbol | |
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| ID | 5107914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2866818 |
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| End bp | 2868260 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640503848 |
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| Product | cbb3-type cytochrome c oxidase subunit I |
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| Protein accession | YP_001188092 |
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| Protein GI | 146307627 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
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| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000152837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.741537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAG CAATCAGTCA GACTGCTTAT AACTATAAGG TGGTCCGCCA GTTCGCCATT
ATGACGGTGA TCTGGGGGGT CATTGGGATG GGTCTAGGCG TGTTCATCGC CGCACAACTC
GTGTGGCCGG AACTCAACCT AAACCTGCCG TGGACCAGCT TCGGCCGTCT GCGCCCGCTG
CACACCAACG CGGTGATCTT CGCCTTCGGC GGATGCGCCC TGTTCGCGAC CTCGTACTAC
GTGGTCCAGC GCACCTGTCA GACGCGCCTG ATCTCCGACG GTCTGGCTGC CTTCACCTTC
TGGGGCTGGC AAGCGGTCAT CGTGCTCGCC GTGATCACCC TGCCCATGGG CTACACCAGC
TCCAAGGAAT ACGCCGAGCT CGAGTGGCCG GTGGACATCC TGCTGGGCAT CGTCTGGATC
ACCTACCTGG TGGTGTTCTT CGGCACCATC GTCAAGCGCA AGACCAAGCA CATCTATGTG
GGCAACTGGT TCTTCGGGGC GTTCATCCTG GTCACCGCGA TGCTGCACAT CGTCAACAGC
GCAGCCATGC CGGTGAACAT GTTCAAGTCG TACTCCATGT ACGCTGGTGC CACCGACGCC
ATGATCCAGT GGTGGTACGG CCACAACGCC GTGGGCTTCT TCCTGACCAC CGGCTTCCTG
GGCATGATGT ACTACTTCGT ACCCAAGCAG GCCGAGCGTC CGATCTACTC CTATCGCCTG
TCCATCGTGC ACTTCTGGGC GCTGATCACC CTGTACATCT GGGCCGGTCC GCACCACCTG
CACTACACCG CGCTGCCGGA CTGGGCGCAG AGCCTGGGCA TGGCCATGTC CGTGGTGCTG
CTGGCACCGA GCTGGGGCGG CATGATCAAC GGCATGATGA GCCTGTCCGG CGCCTGGCAT
AAGCTGCGCA CCGACCCGAT CCTGCGCTTC CTGGTGGTGT CCCTGGCCTT CTACGGCATG
TCGACCTTCG AAGGCCCGAT GATGGCCATC AAGACCGTCA ACGCCCTGTC CCATTACACC
GACTGGACCA TCGGCCACGT ACACGCCGGC GCCCTCGGCT GGGTAGCGAT GATCTCCATC
GGCTCGCTGT ATCACCTGAT TCCCAAGGTG TTCGGCCGCG AGCAGATGCA CAGCATCGGC
CTGATCAACG CGCACTTCTG GCTCGCCACC ATCGGCACCG TGCTGTACAT CGCCTCGATG
TGGGTCAACG GCATCACCCA GGGCCTGATG TGGCGCGCGG TGAACGAAGA CGGCACCCTG
ACCTACTCCT TCGTAGAAGC GCTGGAAGCC AGCCACCCCG GCTTCGTGGT GCGCATGATC
GGCGGCGCCT TCTTCGTCAC CGGCATGCTG CTGATGGCTT ACAACACCTA CCGCACCGTG
CGTGCCGCCA AGCCGGCTGA ATACGAAGCG GCCGCGCAGA TTCCCGCCGG AGTAGCTCAC
TGA
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| Protein sequence | MSTAISQTAY NYKVVRQFAI MTVIWGVIGM GLGVFIAAQL VWPELNLNLP WTSFGRLRPL
HTNAVIFAFG GCALFATSYY VVQRTCQTRL ISDGLAAFTF WGWQAVIVLA VITLPMGYTS
SKEYAELEWP VDILLGIVWI TYLVVFFGTI VKRKTKHIYV GNWFFGAFIL VTAMLHIVNS
AAMPVNMFKS YSMYAGATDA MIQWWYGHNA VGFFLTTGFL GMMYYFVPKQ AERPIYSYRL
SIVHFWALIT LYIWAGPHHL HYTALPDWAQ SLGMAMSVVL LAPSWGGMIN GMMSLSGAWH
KLRTDPILRF LVVSLAFYGM STFEGPMMAI KTVNALSHYT DWTIGHVHAG ALGWVAMISI
GSLYHLIPKV FGREQMHSIG LINAHFWLAT IGTVLYIASM WVNGITQGLM WRAVNEDGTL
TYSFVEALEA SHPGFVVRMI GGAFFVTGML LMAYNTYRTV RAAKPAEYEA AAQIPAGVAH
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