| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2599 |
|---|
| Symbol | |
|---|
| ID | 5107909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2863317 |
|---|
| End bp | 2864756 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640503843 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit I |
|---|
| Protein accession | YP_001188087 |
|---|
| Protein GI | 146307622 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00049011 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.717457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAA CAACCCGTTC CGCCTACAAC TACAGGGTGG TTCGCCAGTT CGCCATTATG
ACGGTGGTTT GGGGCATCGT CGGCATGGGA CTCGGCGTTT TCATCGCCGC CCAGCTGGCC
TGGCCCGACC TCAACTTCAA CCTGCCCTGG ACCAGCTTCG GCCGGCTCCG CCCGCTGCAC
ACCAATGCGG TGATCTTCGC CTTCGGCGGC TGCGCCCTGT TCGCCACCAG CTACTACGCG
GTACAGCGCA CCAGTCAGAC GACGCTCTTC GCGCCCAAGC TGGCTGCCTT CACCTTCTGG
GGTTGGCAAC TGGTGATCGT GCTCGCGGCC ATCAGCCTGC CCCTGGGCTG GACCAGTTCC
AAGGAATACG CCGAGCTGGA ATGGCCGATC GACATCCTGA TCACCATCGT CTGGGTCTCC
TACGCCATCG TCTTCTTCGG CACGGTGATG CAGCGCAAGG TCAGCCACAT CTACGTCGGC
AACTGGTTCT TCGGCGGGTT CATCCTCACC GTGGCCATCC TGCACGTGGT CAACAACCTG
GAAATCCCGA TCACCCTGAC CAAGTCCTAC TCGCTGTATG CGGGGGCGAC CGATGCGATG
ATCCAGTGGT GGTACGGCCA CAACGCCGTG GGCTTCTTCC TGACCGCCGG CTTCCTGGGG
ATGATGTACT ACTTCGTGCC CAAGCAGGCT GGGCGTCCGG TGTATTCCTA CCGCCTGTCC
ATCGTCCACT TCTGGGCGCT GATCGCGGTG TACATCTGGG CCGGCCCGCA CCACCTGCAC
TACACCGCGC TGCCTGACTG GGCGCAGAGC CTGGGCATGG TGATGTCGCT GGTCCTGCTG
GCGCCGAGCT GGGGCGGCAT GATCAACGGC ATGATGACCC TCTCCGGTGC CTGGCACAAA
CTGCGCACCG ACCCGATCCT GCGCTTCCTG GTGGTGTCCC TGGCGTTCTA CGGCATGTCG
ACCTTCGAAG GCCCGATGAT GGCCATCAAG ACCGTCAACG CCCTGTCCCA CTACACCGAC
TGGACCATCG GCCACGTCCA CGCCGGCGCC CTCGGCTGGG TTGCCATGGT GTCGATCGGC
TCGCTGTATC ACCTGATTCC CAAGGTGTTC GGCCGCGAGC AGATGCACAG CATCGGCCTG
ATCAACAGCC ACTTCTGGCT GGCCACCATC GGCACCGTGC TGTACATCGC CTCGATGTGG
GTCAACGGCA TCACCCAGGG CCTGATGTGG CGCGCGGTGA ACGAGGACGG CACCCTGACC
TACTCCTTCG TCGAAGCGCT GGAAGCCAGC CACCCCGGCT TCGTGGTGCG GGTGATCGGC
GGCGCGATCT TCTTCGCCGG CATGCTGCTG ATGGCCTGGA ACGTCTGGCT GACCGTACGT
AGCGCCAAAT CCACCGAGAT GGAAGCCGCT GCGCAGTTCT CGGTAGAAGG AGCCCACTGA
|
|---|
| Protein sequence | MNTTTRSAYN YRVVRQFAIM TVVWGIVGMG LGVFIAAQLA WPDLNFNLPW TSFGRLRPLH
TNAVIFAFGG CALFATSYYA VQRTSQTTLF APKLAAFTFW GWQLVIVLAA ISLPLGWTSS
KEYAELEWPI DILITIVWVS YAIVFFGTVM QRKVSHIYVG NWFFGGFILT VAILHVVNNL
EIPITLTKSY SLYAGATDAM IQWWYGHNAV GFFLTAGFLG MMYYFVPKQA GRPVYSYRLS
IVHFWALIAV YIWAGPHHLH YTALPDWAQS LGMVMSLVLL APSWGGMING MMTLSGAWHK
LRTDPILRFL VVSLAFYGMS TFEGPMMAIK TVNALSHYTD WTIGHVHAGA LGWVAMVSIG
SLYHLIPKVF GREQMHSIGL INSHFWLATI GTVLYIASMW VNGITQGLMW RAVNEDGTLT
YSFVEALEAS HPGFVVRVIG GAIFFAGMLL MAWNVWLTVR SAKSTEMEAA AQFSVEGAH
|
|---|
| |