| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2598 |
|---|
| Symbol | |
|---|
| ID | 5107908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2862541 |
|---|
| End bp | 2863215 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640503842 |
|---|
| Product | hydrolase of the alpha/beta-hydrolase fold-like protein |
|---|
| Protein accession | YP_001188086 |
|---|
| Protein GI | 146307621 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3571] Predicted hydrolase of the alpha/beta-hydrolase fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000600311 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.695286 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG GGCCATCTGG GTTTATTGAC GCCGGTCAAT GGGAGCAGGG GCTGCCCTGG
TTGTGGGACG AACCGCCGCA GGGGGCGCGC AGCACGCTGA TCCTGGCCCA TGGTGCGGGC
GCACCGATGG ACAGCCCGTT CATGCAGCAC ATGGCGCAGG GCCTGGCGGC GCGCGGCGTG
CGCGTGGTGC GCTTCGAGTT CGCCTACATG GCGCAGCGCC GGGTGGACGG ACGCAAACGG
CCGCCTAATC CGCAGGCGCA GCTGCTGCAG CAATGGCGCG AGGTGCATGC CCAGGTGCGC
CAACGGGTCG CAGGGGCCGT GGCCATCGGC GGCAAGTCCA TGGGCGGGCG CATGGCCAGC
CTGCTGGCCG ACGAGCTGGG CGCCGCTGCG CTGATCTGTC TGGGCTATCC CTTCTATGCC
GCCGGCAAGC CGGAGAAGCC GCGAGTCGCC CATCTCGCCG AGCTGCGCAC GCCGACGCTG
ATTGTTCAGG GAGAGCGCGA TGCCCTGGGC AATCGCGAGG CCGTCGCTGG CTATGACCTG
TCGCCGGCCA TCGCGCTGCA CTGGCTGCAG GCGGCCGATC ATGATCTCAA GCCGCTCAAG
GCCTCCGGCT TCCGCCATGA GCAACACCTC GACAGCGCGG CTCAGGTCAT CGCCAGGCAA
CTGGGAGCAA GTTGA
|
|---|
| Protein sequence | MSKGPSGFID AGQWEQGLPW LWDEPPQGAR STLILAHGAG APMDSPFMQH MAQGLAARGV
RVVRFEFAYM AQRRVDGRKR PPNPQAQLLQ QWREVHAQVR QRVAGAVAIG GKSMGGRMAS
LLADELGAAA LICLGYPFYA AGKPEKPRVA HLAELRTPTL IVQGERDALG NREAVAGYDL
SPAIALHWLQ AADHDLKPLK ASGFRHEQHL DSAAQVIARQ LGAS
|
|---|
| |