Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2570 |
Symbol | |
ID | 5108037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2832542 |
End bp | 2834626 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640503814 |
Product | TonB-dependent receptor |
Protein accession | YP_001188058 |
Protein GI | 146307593 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00469469 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.000000281684 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCATCGGC AGAGCCCCCG CGTCTGGCTG CCCGCCCTGC TGCTACCGCT GGCCGCGCAG GCCGAGAACG CCAGCTATCA GGCCGAGCCG CTGGTGGTTA CCGGCAGCCG CTATCAGGCC AGCGGCTGGC GCCTGCCCTT TTCGGTCAAC CGCATCGATG CCGAGCAGGC CACTCTGGGT AAGCCGGGGG TCAATCTGTC CGAGGCGCTC GGCAGCGTGC CCGGCCTGGT GGTGCAAAAC CGGCAGAACT ACGCGCAGGA TCTGCAGGTG TCCTCGCGTG GCTTCGGCGC CCGCTCGGCC TTCGGCATTC GCGGTATCAA GCTGCTGGCC GATGGCGTGC CGCTGTCCAA CCCCGACGGC CAGGGCCAGG CGGCGACCTT CGATCTGGAC AGCCTGGAGC GCATCGAGGT GCTGCGCGGC CCCTTCGCCA GCGTCTACGG CAGCAACTCC GGCGGGGTGA TCCAGCTGTT CTCGCGCGAT GGCGAGGGCG CGCCGAGGGT ATCGCTCGAC ACCTCGCAGG CGGCTTTCGG CACCAGCCGC ACCCGTGTGG CGGCTGAAGG CGGCAATGAC CAGGCGGGCT TTATCCTCAA CCGCTCGCAC TTCGAGACCG ACGGCTATCG CGACCACAGC GGCGCCATCC TCGACAAGAC CTTCGCCAAG CTCACCCTGT ATCTGGACGA TGCCAGCAAG CTCAGCCTGA GCTTCAGCCA GCTCGACCAG AACGACACCC AGGACCCGCA GGGCCTGACC TGGCAGCAGG TGCAGGACGA CCGCCGCGCC GCCGCCCCCA GCGCTGTGGC GTTCGATACG CGCAAGACGG TCGATCACCA GCAGCTGGCC CTCAACTACG AGCGCAGCTT CGCCGCCGGC ACCTGGCAGA GCACGGTCTA CAGCGGCACA CGGCGGGTGA TTCAGTACCA GTCGATCCCG GTGGCGGTGC AGGCCAACCC GTCCCATTCC GGCGGGGTGA TCGATTTCGA GCGGCGCTTC CATGGCATCG GCAACCGCTG GATCCAGCCC TTCGACCTGG GCGCCAGCCT GCTGACCCTG ACCGCCGGCC TGGATTACGA CCAGTCGCGC GACGACCGCC AGGGCTACGA GAACTTCGTC GGCAGCACCC TGGGCGTGAA AGGCAATCTG CGCCGTGACG AGCGCAACGA GGTCAGCAGC CTGTCGCCCT ACCTGCAGGC CGCCTGGCAA CTGGGCAAGC TCGACCTGCA GGCCGGCCTG CGCCATAACC AGGTGAAGTT CGAGGTGGAC GACCGCTTCC TGAGCAATGG CGACGACAGC GGCTCGGTCA CCTACCGCGA GCTGACCCCG ACCCTGGGTG CCAGCTATGC GCTGCTGCCC GAGCTGAACC TCTACGCCAG CTGGGGCAAG GGCCTGGAGA CACCGACGCT CAACGAGCTG TCCTACTCGG GCGCCGGCGG TGGTTTCGGC TTCGACCTGC AACCGGCCAC CAGCAAGCAG CTGGAAATCG GCCTCAAGGC CCGTCTGGCC GAGGCCACCA GTCTGCAGCT GGCGCTGTTT CAGATCGATA CCGACGACGA GCTGGTGGTG GCATCCGCCA GCGGCGGCCG CACACGCTTT CAGAACGCCG CACAGACCCG CCGCCGCGGC GTGGAGCTGG CAATGGAAAG TCAGCTCAGC GAAACCCTGC GCGCCACCCT CGCCTACACC CGCATCGACG CCGCCTACCG TCAGGACTTC ACCAGCGGCG GTCGGCTGAT CGAAGCGGGC AATCGCCTGC CCGGCATCCC CGCCAGCACC CTGTATGGCG AACTGGCCTG GCAGCCGCGC GAGGGCTTCA GCACCGCCCT CGAAGGGCTG TACCGCAGCA AGCTGTATGT CGAGGACAGC AACGCCGCCA AGGCCGCGCC CAGTTACGCC CTGTTCAACT GGCAGGCGCG CTTCGAGCAA ACACTCGGTG CCCTGACCTT CAATCAGGTG CTACGCATCG ACAACCTGCT GGACCGCGAA TACATCGGCT CGGTAATAGT CGGCGAGAGC AACGGCCGCT ATTACGAGCC AGGCCCGGAG CGGGCCTGGT ATGTCGGCGC AGGTGTGCAG TACCGGTTCG ATTGA
|
Protein sequence | MHRQSPRVWL PALLLPLAAQ AENASYQAEP LVVTGSRYQA SGWRLPFSVN RIDAEQATLG KPGVNLSEAL GSVPGLVVQN RQNYAQDLQV SSRGFGARSA FGIRGIKLLA DGVPLSNPDG QGQAATFDLD SLERIEVLRG PFASVYGSNS GGVIQLFSRD GEGAPRVSLD TSQAAFGTSR TRVAAEGGND QAGFILNRSH FETDGYRDHS GAILDKTFAK LTLYLDDASK LSLSFSQLDQ NDTQDPQGLT WQQVQDDRRA AAPSAVAFDT RKTVDHQQLA LNYERSFAAG TWQSTVYSGT RRVIQYQSIP VAVQANPSHS GGVIDFERRF HGIGNRWIQP FDLGASLLTL TAGLDYDQSR DDRQGYENFV GSTLGVKGNL RRDERNEVSS LSPYLQAAWQ LGKLDLQAGL RHNQVKFEVD DRFLSNGDDS GSVTYRELTP TLGASYALLP ELNLYASWGK GLETPTLNEL SYSGAGGGFG FDLQPATSKQ LEIGLKARLA EATSLQLALF QIDTDDELVV ASASGGRTRF QNAAQTRRRG VELAMESQLS ETLRATLAYT RIDAAYRQDF TSGGRLIEAG NRLPGIPAST LYGELAWQPR EGFSTALEGL YRSKLYVEDS NAAKAAPSYA LFNWQARFEQ TLGALTFNQV LRIDNLLDRE YIGSVIVGES NGRYYEPGPE RAWYVGAGVQ YRFD
|
| |