| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2568 |
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| Symbol | |
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| ID | 5108035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2829898 |
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| End bp | 2831175 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503812 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001188056 |
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| Protein GI | 146307591 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0724541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000000110918 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGTCG CCGTCTTCCT TACATCCCTG CTGGGTTTCA TGGCCTTCGG CATGCCCATC
GCCTTCGCCC TGATCCTCAC CGCCGCCGTG CTGATGTGGT ACCTGGGCTT CTGGGACGTG
CAGCTGCTGG CGCAGAACCT GCTCGCCGGC GCCGACAGCT TCCCGCTGCT GGCCGTGCCC
TTCTTCATCC TCGCCGGCGA ATTGATGAAC GCCGGCGGCA TCTCGCGGCG CATCATCGCC
ATGGCCCAGG CTTATTTCGG CCATCTGCGC GGCGGCCTCG GTTACGTCGC CATCGCTGCC
GCGGTGTTGC TGGCGAGCAT GTCCGGCTCG GCGCTGGCCG ACACCGCGGC GCTGGCCACC
CTGTTGCTGC CGATGATGCG TCAGCGCGGC TACCCGCTGC ATTCCTCGGC CGGCCTGGTG
GCCGCTGGCG GCATCATCGC GCCGATCATC CCACCGTCGA TGCCCTTCGT GATCTATGGC
GTGGTCACCA ATACCTCGAT CAGCCAGCTG TTCATGGCCG GTCTGGTGCC GGGGCTGATC
ATGGGCGCCG GACTGATCGT CGCCTGGACC CTGATCGCCC GCGGCTTCAC CGAGCCGACG
CCGCCCAAGG CCAGCGCCGC CGAGCGTCGC CGGGTACTGG TCGATGGCGT GGCGGCGCTG
ATGCTGCCGG TGATCATCGT CGGCGGCCTG CGCTTCGGCA TCTTCACCCC GACCGAGGCG
GCCGTGGTCG CCGCGGTCTA TGCCCTGGCG GTGTCGACCC TGTTGTACCG CGAGCTGAGC
TGGACGGACC TGATCGAGAC CCTGACCCGC GCCAGCCGCA CCACCGCCTC GGTGATGTTC
CTCTGCGCCG CGGCAACGGT GTCGGCCTAC ATGATCACCC TGGCCCAGCT GCCGGACGAG
ATCGGAGCCA TGCTCGGGCC GCTGGCCGAG CACCCGCGCC TGCTGGTGCT GGCGATCATG
CTGCTGATGA TCGCGGTGGG TATGGTGCTG GACCTGACGC CGACCATCCT GATCCTCGCC
CCGGTGCTGG CGCCGATCGC CATCAAGGCC GGGGTCGACC CGGTGTACTT CGGCGTGATG
TTCGTGCTGA TCGGCTCCAT CGGCCTGATC ACGCCGCCTG TGGGCACCGT GCTCAACGTG
GTCGGCGGTA TCGGCAAGCT GCGCATGGAG GTACTGGTGC GCGGGGTGAT GCCGTTCTTC
CTGATCTACC TAGGCATCGT CGTCCTGCTG ATCGCGTTTC CGTCCATCGT TACCGTGCCA
CTGGCCTGGT TGCGCTGA
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| Protein sequence | MTVAVFLTSL LGFMAFGMPI AFALILTAAV LMWYLGFWDV QLLAQNLLAG ADSFPLLAVP
FFILAGELMN AGGISRRIIA MAQAYFGHLR GGLGYVAIAA AVLLASMSGS ALADTAALAT
LLLPMMRQRG YPLHSSAGLV AAGGIIAPII PPSMPFVIYG VVTNTSISQL FMAGLVPGLI
MGAGLIVAWT LIARGFTEPT PPKASAAERR RVLVDGVAAL MLPVIIVGGL RFGIFTPTEA
AVVAAVYALA VSTLLYRELS WTDLIETLTR ASRTTASVMF LCAAATVSAY MITLAQLPDE
IGAMLGPLAE HPRLLVLAIM LLMIAVGMVL DLTPTILILA PVLAPIAIKA GVDPVYFGVM
FVLIGSIGLI TPPVGTVLNV VGGIGKLRME VLVRGVMPFF LIYLGIVVLL IAFPSIVTVP
LAWLR
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