| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2552 |
|---|
| Symbol | |
|---|
| ID | 5108019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2814844 |
|---|
| End bp | 2815932 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640503796 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_001188040 |
|---|
| Protein GI | 146307575 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00155059 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000000000281292 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCA CGATGGCTGA TTTACCGATC GACGACCTCA ACGTCGCCTC CAACGAAACC
CTGATCACCC CCGACCAGCT CAAACGCGAG ATTCCTCTGA CCGATGCCGC GCTCAAGACC
GTGGCCCATG GTCGTCAGGT GGTGCGCGAC ATTCTCGATG GCAAGGACCA TCGTCTGTTC
GTGGTGGTCG GCCCCTGCTC GATCCATGAC ATCAAGGCCG CCCACGAATA CGCCGAGCGC
CTCAAGGGGC TGGCCGCCGA GCTGTCCGAT ACCCTGTTCC TGGTCATGCG CGTGTACTTC
GAGAAGCCGC GTACCACGGT TGGCTGGAAA GGCCTGATCA ACGATCCCTA TCTGGACGAC
TCGTTCAAGA TCCAGGACGG CCTGCACATC GGTCGTCAGC TGCTGCGCGA TCTGGCGGAG
ATGGGCCTGC CCACCGCCAC CGAAGCGCTC GACCCGATTT CCCCGCAGTA CCTGCAGGAC
CTGATCAGCT GGTCGGCCAT CGGCGCGCGT ACCACCGAAT CCCAGACCCA CCGCGAGATG
GCTTCCGGCC TGTCCTCGGC CGTCGGCTTC AAGAACGGCA CCGACGGTGG CCTGACCGTG
GCGATCAACG CCCTGCAGTC GGTTTCCAGC CCGCACCGTT TCCTCGGCAT CAACCAGGAA
GGTGGCGTTT CCATCGTCAC CACCAAGGGC AACGCCTACG GCCACGTGGT ACTGCGCGGC
GGCAACGGCA AACCCAACTA CGACTCGGTC AGCGTCGCCA TTTGTGAGCA GGAACTGACA
AAAGCCGGCA TCCGCCCGAA CATCATGGTC GACTGCAGCC ATGCCAACTC CAACAAGGAC
CCGGCCCTGC AGCCGCTGGT GCTGGAGAAC GTCGCCAACC AGATTCTGGA GGGCAACAAT
TCCATCGTCG GCCTGATGGT CGAGAGCCAC CTGGGCTGGG GCAACCAGTC GATTCCGAAG
AATCTGAGCG ACCTCAAGTA CGGTGTCTCC ATCACCGATG CATGCATCGA CTGGGATACC
ACCGAGAAGA GCCTGCGCAG CATGCACGCC AAGCTCAAGG ACGTGCTGCC CAAGCGTCAG
CGTGGCTGA
|
|---|
| Protein sequence | MNSTMADLPI DDLNVASNET LITPDQLKRE IPLTDAALKT VAHGRQVVRD ILDGKDHRLF
VVVGPCSIHD IKAAHEYAER LKGLAAELSD TLFLVMRVYF EKPRTTVGWK GLINDPYLDD
SFKIQDGLHI GRQLLRDLAE MGLPTATEAL DPISPQYLQD LISWSAIGAR TTESQTHREM
ASGLSSAVGF KNGTDGGLTV AINALQSVSS PHRFLGINQE GGVSIVTTKG NAYGHVVLRG
GNGKPNYDSV SVAICEQELT KAGIRPNIMV DCSHANSNKD PALQPLVLEN VANQILEGNN
SIVGLMVESH LGWGNQSIPK NLSDLKYGVS ITDACIDWDT TEKSLRSMHA KLKDVLPKRQ
RG
|
|---|
| |