| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2548 |
|---|
| Symbol | |
|---|
| ID | 5108015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2812035 |
|---|
| End bp | 2812940 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640503792 |
|---|
| Product | 5'-nucleotidase |
|---|
| Protein accession | YP_001188036 |
|---|
| Protein GI | 146307571 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0352876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0000000276968 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGG GATTGGCTGA CAAGCTGGTG CTGGCGATTT CCTCGCGCGC GCTGTTCGAT
CTCAGTGAAA GCCATCAGAT CTACGAGAGC GAGGGGGTGG AGGCTTACCG CCGTTACCAG
ATCGAGCACG AGGACGAAGT GCTGATGCCG GGCGACGCCT TTCCTCTCGT GGAGAAGCTG
CTCGGGCTCA ACACGCGCCT GAGCGAGCAG CGCGTCGAAG TGATTCTGGT CTCGCGCAAC
AGCGCCGATA CCGGCCTGCG TGCTTTCAAC TCGATCCAGC ATTACGGTCT GGGGATTTCC
CGCGCGGCCT TCGTTGGTGG GCGCAGCCCC GATCCTTATC TGGCGGCATT TGGCTGCCAT
CTGTTTCTTT CCACCCATGC CGATGACGTG CGCAATGCAC TGAAGGCCGG CTTTGGCGCG
GCGACGCTGC TGTCCGGCGG CACGCGTCGG GCCAACAGCA ACGAGCTGCG CATCGCCTTC
GACGGTGACG CGGTGCTGTT TTCCGACGAC TCCGAGCGCG TGTATCAGAA CGGCGGGCTG
CATGCCTTTC AGAGTCATGA GCGTGAGGCG GCGCGCCAGG CGTTGCCCGG TGGGCCGTTC
AAGCCGTTCC TGGCGGCGCT GCACAATCTG CAGCAGGAAT TCCCCGAACA GGACTGCCCC
ATCCGTACTG CGCTGGTGAC CGCACGCTCG GCGCCTGCCC ACGAGCGGGT GATTCGCACC
CTGCGCGAAT GGAACATTCG CCTGGACGAG TCCTTCTTCC TCGGCGGACT GGACAAGTCG
GCCGTGCTCG AAGCCTTCGC CGCCGATGTG TTCTTCGATG ATCAGACCGG CCATTGCGAG
AAGGCGCGGC AGGTGGTGGC GACCGGGCAC GTGCCGCACG GCGTCAGCAA CGAACTGCAG
CCTTAG
|
|---|
| Protein sequence | MGKGLADKLV LAISSRALFD LSESHQIYES EGVEAYRRYQ IEHEDEVLMP GDAFPLVEKL
LGLNTRLSEQ RVEVILVSRN SADTGLRAFN SIQHYGLGIS RAAFVGGRSP DPYLAAFGCH
LFLSTHADDV RNALKAGFGA ATLLSGGTRR ANSNELRIAF DGDAVLFSDD SERVYQNGGL
HAFQSHEREA ARQALPGGPF KPFLAALHNL QQEFPEQDCP IRTALVTARS APAHERVIRT
LREWNIRLDE SFFLGGLDKS AVLEAFAADV FFDDQTGHCE KARQVVATGH VPHGVSNELQ
P
|
|---|
| |