| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2538 |
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| Symbol | |
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| ID | 5108005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2798314 |
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| End bp | 2801037 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503782 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001188026 |
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| Protein GI | 146307561 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.896851 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0163895 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCC AGAACCAGCC TCGTCAGTCC ACGGTGCCCC TGCTGCGCAC CAAACTCTAT
CCGGCCCATG GAGAGGGAGC CCCTCTGTTG GAGCGTTCGG CCTTGCTCGA GCGGCTGCTG
GCCGCACGCG AGCAGCGTCT GATCGTCCTC AGCGCGCCGG CCGGCTTCGG CAAGAGCACC
GTCCTCAGCC AGTTGCGCCG TCGCCTGCAG GAGCACGGCG CGCGCGTCGC CTGGTTGTCG
TGCGACGAGG CCGACAGCGA ACCGGCGAGA TTCCTGCAGT ACCTGGTGGC CGCCATCGAG
TCGGCCTGTC CCGGTTTCGG CAGTAGCGCC TCGGCGCTGC TGCAGGGTGA GATCAGCTGG
CCGCTGGAGG CGGTGATCGA CGCCTTCCTC GATGACCTCA AGGCGCTGCC TGGCGAGCTT
TACCTGATGC TGGACGACTT TCACCGCATC CGTCATCCGT CCCTCGGTCA GGGCGCCCGC
TACCTGATCG AGCGCCTGCC CAAGCATGTG CGTCTGGTAG TCAGCACCCG CTATCAGCCG
CGGTTTCTCG ATGAGCCGCC GTCGCTTGGC GGCTGGGCGT TCTGGCTAAG GGCCGAGGAT
CTGCGCCTGT CTCGCGGGGA AACCGCCGCC TACCTGCGCA CCATCAAGCA GCTGGCGCTC
GATGAGGCTG AGCTCGATCA GCTGCATGCC CGTACCGAGG GCTGGATCAC CGCGCTGCAC
CTGGCGGCGC TGGCGCTGCC GCGGCAGCGT GACCGCGCCG CCTTTCTCGC CGGGCTGTCC
GGCGCCGAGC GCAATATCGC CGATTACCTC GCCGAGGATG TGGTGGCCAG TCTGCCCGAG
GCGCAGCAGC TGTTCCTCGA TCAGACCTCG GTGCTCGACG AATTCAACGC CGAACTGTGC
AATGCACTGA CCGGCCGCCG CGATGGCCGT GACATGCTGC GCCGGCTGCA GAGCGAGCAG
CTGTTCGTCA TTCCGCTGGA CGAGCAGGGC GAGTGGTTTC GTTATCACCA TCTGTTTGCC
GAGTTTCTCC AGGGGCGGCT GGCCAAGCGC GGCGACCCGG CGCATCTGCT GCACGCTGCC
GCGCGCTGGT GCGAGGCGCG CGATCTTGCC GACAAGTCGA TCAAGTATGC CCTGCGAGCA
CGCGACTATG GCTTTGCCGC CGAGCTGCTG GAGCGTCAGG GCGCGCGCCT GATCGCCGGC
AACCGGGTGT ACGGCATTCT CGCCATCCTC AAGGACATAC CGCCGGTGGT GATCGCCGAG
CAGCCGGTGT TCCAGATCTT CTATGCCTGG CAGCTGGCCT TCGAGCAGAA GTTCGCCGAA
TCCGAGGCGC TGATCGAGGA GGTCAGCACG CGCCTGACCC AGGGGCGCGG CAAGGGCATG
CACTTCGGCC TGATCGAGCT GCTGGCCGCC GCCCAGGTGC TCAAGGCCCT GGTGCTCTTG
TACCAGGACA AGCTGGAAGC CTGCCTCAAG GTCGCCGGTC ACTGGCTGGC CCTGGTGCCG
CAGAACCAGC CGGTCTTTCG CGCCAGCCTG GCCTGCGTGC AGGCCGCGGC CTTCGCCCTG
CTCGGCGAGT TTGGCGAAGC GGCCAAGGCC ATTGCCGTGG CGCGGGAAAA CCTGCGCCAG
TGCGAGAGCG AGTACCTGCA TGTGATGGCC AGCCTGATCG AGGCGCTGAT CTGCAAGGAG
TACGGCGAAC TGGAGCGCGG ACGCGCCCTG GCCGAGGCCG CACGGGCGCG GGTGGAGCAG
GTGTTCGGAC GACGCAGCCG AGTCGGCGGC CCGCTGGGCC TGGCCTATGC CGACCTGCTC
TACGAGCAGG ATCGCCATGG CGCGATACTC GCCGAGCTGC CGCTGGCCAC CACCTGGCGC
GACGTCGCCA CTCCGGTGGA GCTGATCAGT CGCGGCAAGC TGGTGATGGC ACGCGCGCGT
TTCTTTGCCG GCGCGGCGGA GCAGGGGCTG GAAGAGCTCG ACGAGTGGCT GGCCGGGCTG
CAGGGGCCCG GCTACGAACG CGTGTTCGCC ATCGGCATGG GCTGCAAGGT GCAGTTCCTC
CTGTGGCTGC GCCGGCCCAA CGAGGCCCAG CGCATCTATC TGCAACTGGA GCGTCATCTC
GCCACGCTGC CCATCGAACG CTATGGCGAT GCCCATACCG CACTGGCGCT GAGTCAGGCG
CGTCTGGCGT TGAGCGAGCG GCGCGTGGAC AAGGCCCAGG CCAGCCTGGA AGCCTGCCTG
GCCAAGCAGG GCGCCGAGCA CCAGCGCGAC CGGCGCCTGC GTCTGAGCCT GTTACTTTCT
GTGGCGTACT GGCGCAAAGG TAACAGCGAA AAGGCCTTCG CCCTGCTGCG TGCCACCCTC
GAAGAGGCCT GGCAGCGCGG CTATCGCCGT CTGTTCCAGG ACGATGCCTT GTGGCTGCTG
CCGCTCTGGG ACGCCTGGTG CAGCGCCGAG CCCAAGTGCG CGGCGGCCTG GCAGGGGCTG
GCCGAACTGC TCCGCGAGCA GTGCCGCCGG ATGGCCATAG ATCCTGAAAG TTTCGAGGAA
AATCAGGATG TTAGCCATCG CGAAAGAGAG ATCCTGCGGC TCGTGGCGGC GGGGCTGTCG
AACCGCGACA TTGCCCAGAC GGTGCATTTG TCGGAAGCCA CCATCAAGTG GCACCTGCAC
AACCTGTTTT CCAAGCTGGG CGTGCGCAGC CGGACTCAGG CCGTGCTCAA GGGCAAGAGT
CTCGGCCTTT TGAGCGAGGC CTGA
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| Protein sequence | MTSQNQPRQS TVPLLRTKLY PAHGEGAPLL ERSALLERLL AAREQRLIVL SAPAGFGKST
VLSQLRRRLQ EHGARVAWLS CDEADSEPAR FLQYLVAAIE SACPGFGSSA SALLQGEISW
PLEAVIDAFL DDLKALPGEL YLMLDDFHRI RHPSLGQGAR YLIERLPKHV RLVVSTRYQP
RFLDEPPSLG GWAFWLRAED LRLSRGETAA YLRTIKQLAL DEAELDQLHA RTEGWITALH
LAALALPRQR DRAAFLAGLS GAERNIADYL AEDVVASLPE AQQLFLDQTS VLDEFNAELC
NALTGRRDGR DMLRRLQSEQ LFVIPLDEQG EWFRYHHLFA EFLQGRLAKR GDPAHLLHAA
ARWCEARDLA DKSIKYALRA RDYGFAAELL ERQGARLIAG NRVYGILAIL KDIPPVVIAE
QPVFQIFYAW QLAFEQKFAE SEALIEEVST RLTQGRGKGM HFGLIELLAA AQVLKALVLL
YQDKLEACLK VAGHWLALVP QNQPVFRASL ACVQAAAFAL LGEFGEAAKA IAVARENLRQ
CESEYLHVMA SLIEALICKE YGELERGRAL AEAARARVEQ VFGRRSRVGG PLGLAYADLL
YEQDRHGAIL AELPLATTWR DVATPVELIS RGKLVMARAR FFAGAAEQGL EELDEWLAGL
QGPGYERVFA IGMGCKVQFL LWLRRPNEAQ RIYLQLERHL ATLPIERYGD AHTALALSQA
RLALSERRVD KAQASLEACL AKQGAEHQRD RRLRLSLLLS VAYWRKGNSE KAFALLRATL
EEAWQRGYRR LFQDDALWLL PLWDAWCSAE PKCAAAWQGL AELLREQCRR MAIDPESFEE
NQDVSHRERE ILRLVAAGLS NRDIAQTVHL SEATIKWHLH NLFSKLGVRS RTQAVLKGKS
LGLLSEA
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