Gene Pmen_2527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2527 
Symbol 
ID5107994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand- 
Start bp2788390 
End bp2788974 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content64% 
IMG OID640503771 
ProductTetR family transcriptional regulator 
Protein accessionYP_001188015 
Protein GI146307550 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.490074 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.267005 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCGTT CATCGCGCAA AGACGAGATT CTGCAGGCTG CGCTGGCCTG CTTCACCGAG 
CACGGCGTCG ATGCCACCAC CATCGAGATG ATCCGCGACC GCTCCGGGGC GAGCATCGGC 
AGTCTGTATC ACCACTTTGG CAACAAGGAG CGGATCATCG CCGCGCTCTA TCTGGCCGGT 
ACCGCGCAGT ATGCCGATCT GCTGCAGCGC GGGTTCGCCG AAGCTGCCAG TGCCGAGGCA 
TGCGTCAAAC TGCTGGTAAC CAGCTACATC GACTGGGTAG TGACCAACCC GGATTGGGCG 
CGTTTCATCC TGCACAGTCG CAGTCGGGTC GAAGCGGGCG AGATGGGGGA TACGCTGCGT 
GAGGCCAACC GTGAGCACTT TGCTCGGATA CTTGCGGCGC TTGCCGAGTA CCGTCGCCAG 
GGGCTGTTCA GGAAGTTGCC GGACGACTGC TTCGCCTCGG TGGTGATTGG GCCGACGCAG 
GATCTGGCGC GCAACTGGCT GGCTGGCCGC ACCCAAAGCG AGCTGGGCGA ATGCCGCGAG 
CTGCTGGCGC AGATCGCCTG GGAAAGCGTG AAAAGCGGCG GCTAA
 
Protein sequence
MPRSSRKDEI LQAALACFTE HGVDATTIEM IRDRSGASIG SLYHHFGNKE RIIAALYLAG 
TAQYADLLQR GFAEAASAEA CVKLLVTSYI DWVVTNPDWA RFILHSRSRV EAGEMGDTLR 
EANREHFARI LAALAEYRRQ GLFRKLPDDC FASVVIGPTQ DLARNWLAGR TQSELGECRE 
LLAQIAWESV KSGG