| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2442 |
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| Symbol | |
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| ID | 5107318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2705497 |
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| End bp | 2706912 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503686 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001187930 |
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| Protein GI | 146307465 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.207678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGAC TGTTGCTGAT CCTGTGCCTG TTGGCCGCGC TGCCGTTCTC GGTCAGCGCG
CGCGTGGCCG GCCCGCCGGA GGTCGGCAGC CAGGTGCGCA GCGCGCGTGA TCTGCCGACG
ATCCGCAGCA GTGGCGAGCT GCGCGTGCTG GTCAACCAGA GTCGCAACAG TTCGGGCGCG
GTCAAGGGGC AGAGCATCGG TGTCGAGTAC CATCGCCTGC GCGCCTTCGA ACAGTATCTC
AATCGCAATT CCCGCGATGG CCGCAGCCTC AAGCTGAAGA TCATTCCCAA GGCCAAGGAT
CAGCTGCTCG GCGCCCTGCA GCGTGGCGAG GGCGATCTGG TGGCGCCGGG GGAGCTGCTC
AATGTGCGTA CCGGCCACGA TGTCAGCGCC AGCATGGCGA TTCGCCGCGA GGTGCCGCTG
GTGTTGGTGT CGAAGCAGGG CAACCGGCAT TACCGCAGCC TCGAGCAACT GGCCGGCCGC
AGCCTGTCGC TGCCCACCGG TAGCGCCGTG GGTGAGGCGC TGCGACGGAT CAATCAGCAG
TTGGCCGACC GCAAGCTGCC TCCCATCGTC GTGGAGTGGG TGGACCCCAG CCTGGCGGTG
GAGGACGTGC TGGAGATGGT TCAGGCCGGC ATCTTCGAGC GCACCGCCGT GGAGCTGCCA
ATCGCCGAGC GCTGGGCCAA GGTGATGCCC AAGCTGCGCG TCGACAAGCA TCTGGTGCTG
GCGCGCGACG GCGACATGAA ATGGTTCGTG CGCCCCGATG CGCCGATGCT GCGCGCCAGC
ATCGACCGCT TCTTCAGCGG CTATCAGGCG CCGGCCGATC AGGATGCGGC GTTCCAGCGG
GTCTACCGGC GCCAGTACCG GGTGCATTCG CCGCTCGGAC GCACCGAGCG ACAGCGTCTG
GAAAGAGTGC GTCCGGTGCT GCAGCAGCAT GCCGAACAAC AAGGTTTCGA CTGGCTGCTG
CTGGCCGCCC TGGCGTTCAA GGAGTCGACC CTCAATCCTT CGGCGCGCGG CGCCAGCGGC
GCCACCGGGC TGATGCAGAT CACTCCGGCG GCAGCGCGAA GCGTCGGGGT GAGCAACATC
CAGAACCTCG ACGGTAACGT CCAGGCCAGC AGCAAGTACC TAGCGATGAT CCGCCGCAAC
TTCTTCAACA GCCCGCAGCT CAACGAGCGC GAACGCATGG CATTCGTCCT GGCGGGCTAC
AACCTGGGCC CGCAACGGGT GCAGAGCCTG CGCGCCGAGG CACGCAGGCG GGGCCTGAAT
CCCAATCAGT GGTTCTTCCA GGTCGAGCGT GTGGCCATGG AGCAGATGGG CATGGGCGTG
GTGAGTTATG TGAATGCGGT GAATAAGTAC TACCTTGCTT ATGACCGTGA GCGCTATCTG
CTCGAACCGC AAAGACAGCG TCTGACGGCC AACTAA
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| Protein sequence | MSRLLLILCL LAALPFSVSA RVAGPPEVGS QVRSARDLPT IRSSGELRVL VNQSRNSSGA
VKGQSIGVEY HRLRAFEQYL NRNSRDGRSL KLKIIPKAKD QLLGALQRGE GDLVAPGELL
NVRTGHDVSA SMAIRREVPL VLVSKQGNRH YRSLEQLAGR SLSLPTGSAV GEALRRINQQ
LADRKLPPIV VEWVDPSLAV EDVLEMVQAG IFERTAVELP IAERWAKVMP KLRVDKHLVL
ARDGDMKWFV RPDAPMLRAS IDRFFSGYQA PADQDAAFQR VYRRQYRVHS PLGRTERQRL
ERVRPVLQQH AEQQGFDWLL LAALAFKEST LNPSARGASG ATGLMQITPA AARSVGVSNI
QNLDGNVQAS SKYLAMIRRN FFNSPQLNER ERMAFVLAGY NLGPQRVQSL RAEARRRGLN
PNQWFFQVER VAMEQMGMGV VSYVNAVNKY YLAYDRERYL LEPQRQRLTA N
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