Gene Pmen_2431 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2431 
Symbol 
ID5108271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2689515 
End bp2690822 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content66% 
IMG OID640503675 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001187919 
Protein GI146307454 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0638771 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.904192 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCTTGGCG GTTGTCAGTG CTTATGGTGC CGACTCCCAC AAGAAGTGAT CCGTTTCCCC 
GCCATGTCCA ACGCCTCTGC GACCTCCGCC ACTACCTCCC GCCAATGGCT GATCGGCCTG
ACTCTGCTGG CCGTGCTGTT TCTGCTGCTC TGGTGGTTCT GGCCGAGCAA GCCGCAATCC
CAGCCCATGG GGCGCGGTCG CTTCGGTGAC ATGGGCCCGG TACCGGTGCG CCTGGTCGAG
GTGGAGCAGG GCAATTTCGC CATCGAACTC AAGGCGCTCG GCACGGTGAC CGCCTACAAC
ACCGTCAACG TGCGCTCGCG AGTGGACGGC GAACTGGTCA AGGTGCTGTT CGAGGAAGGC
CAGCAGGTCA AGGCCGGCGA CCTGCTCGCG GTGATCGACC CGCGCCCCTA TCAGGTGGCG
CTGCAGCAGG CGCAGGGCGC ATTGCAGGAG AACCAGGCGC AGCTGAAGAA CGCCGAGCTG
GACCTGCAGC GCTACAAGGG GCTGTTCGCC GAAGACAGCA TCGCCAAGCA GACCCTGGAT
ACCCAGCAGG CGCTGGTCAA CCAGTACCGC GGCAGCCTGC AGAGCAATCA GGCCGACGTC
GCCACCGCCA AGCTCAATCT GGATTTCACC CAGATTCGTG CGCCGATCTC CGGTCGTCTC
GGTCTGCGGC AGCTGGATGT CGGCAACCTG GTCAGCGGTG GCGATACCAC GCCGCTGGTG
GTGATCACCC AGACCGACCC GATCGCGGTG ATTTTCACCA TCCCCGAGGG CGATCTGCCG
GCGGTGCTGC AAAGACGCCG CGACGGCGTG ACCCTGGCCG TCGAAGCCTG GGACCGCGGC
GAGCGGTTGA AGCTGGCCGA GGGCGTGCTG CAGAGCCTGG ACAACCAGAT CGATACCGCC
ACCGGCACGG TCAAGCTCAA GGCGCGTTTC GACAATGCCG AGCAGATGCT GTTTCCCAAC
CAGTTCGTCA ACGTGCGTTT GCGCGTGGAA ACCCGCGAAG CGGCCACCAT CATTCCGTCG
GCTGCCGTGC AGTTCGGCAC CCGCGGCACC TTCGTCTACG TCGTCGACAG CGATAGCAAA
GTGAGCATCC GCCAGGTCAC CATCGCGGCC AGCGACGCCG AGCGCAGCCT GGTGGCCGGC
GGCGTGCAGC CTGGCGAACG GCTGGTGCTG GAGGGCACCG ACCGCCTGCG CGACGGCAGC
GAGGTGGAAG TGGTCGACCC GGACCTGGTG CAGAGCCCCG ACGGCGCGGC CAATGAGCCG
GACGCCCGCC AGGGCAAGCG CGACGGCGCA GCACGGAACG GCGCATGA
 
Protein sequence
MLGGCQCLWC RLPQEVIRFP AMSNASATSA TTSRQWLIGL TLLAVLFLLL WWFWPSKPQS 
QPMGRGRFGD MGPVPVRLVE VEQGNFAIEL KALGTVTAYN TVNVRSRVDG ELVKVLFEEG
QQVKAGDLLA VIDPRPYQVA LQQAQGALQE NQAQLKNAEL DLQRYKGLFA EDSIAKQTLD
TQQALVNQYR GSLQSNQADV ATAKLNLDFT QIRAPISGRL GLRQLDVGNL VSGGDTTPLV
VITQTDPIAV IFTIPEGDLP AVLQRRRDGV TLAVEAWDRG ERLKLAEGVL QSLDNQIDTA
TGTVKLKARF DNAEQMLFPN QFVNVRLRVE TREAATIIPS AAVQFGTRGT FVYVVDSDSK
VSIRQVTIAA SDAERSLVAG GVQPGERLVL EGTDRLRDGS EVEVVDPDLV QSPDGAANEP
DARQGKRDGA ARNGA