Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2431 |
Symbol | |
ID | 5108271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2689515 |
End bp | 2690822 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640503675 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001187919 |
Protein GI | 146307454 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0638771 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.904192 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTTGGCG GTTGTCAGTG CTTATGGTGC CGACTCCCAC AAGAAGTGAT CCGTTTCCCC GCCATGTCCA ACGCCTCTGC GACCTCCGCC ACTACCTCCC GCCAATGGCT GATCGGCCTG ACTCTGCTGG CCGTGCTGTT TCTGCTGCTC TGGTGGTTCT GGCCGAGCAA GCCGCAATCC CAGCCCATGG GGCGCGGTCG CTTCGGTGAC ATGGGCCCGG TACCGGTGCG CCTGGTCGAG GTGGAGCAGG GCAATTTCGC CATCGAACTC AAGGCGCTCG GCACGGTGAC CGCCTACAAC ACCGTCAACG TGCGCTCGCG AGTGGACGGC GAACTGGTCA AGGTGCTGTT CGAGGAAGGC CAGCAGGTCA AGGCCGGCGA CCTGCTCGCG GTGATCGACC CGCGCCCCTA TCAGGTGGCG CTGCAGCAGG CGCAGGGCGC ATTGCAGGAG AACCAGGCGC AGCTGAAGAA CGCCGAGCTG GACCTGCAGC GCTACAAGGG GCTGTTCGCC GAAGACAGCA TCGCCAAGCA GACCCTGGAT ACCCAGCAGG CGCTGGTCAA CCAGTACCGC GGCAGCCTGC AGAGCAATCA GGCCGACGTC GCCACCGCCA AGCTCAATCT GGATTTCACC CAGATTCGTG CGCCGATCTC CGGTCGTCTC GGTCTGCGGC AGCTGGATGT CGGCAACCTG GTCAGCGGTG GCGATACCAC GCCGCTGGTG GTGATCACCC AGACCGACCC GATCGCGGTG ATTTTCACCA TCCCCGAGGG CGATCTGCCG GCGGTGCTGC AAAGACGCCG CGACGGCGTG ACCCTGGCCG TCGAAGCCTG GGACCGCGGC GAGCGGTTGA AGCTGGCCGA GGGCGTGCTG CAGAGCCTGG ACAACCAGAT CGATACCGCC ACCGGCACGG TCAAGCTCAA GGCGCGTTTC GACAATGCCG AGCAGATGCT GTTTCCCAAC CAGTTCGTCA ACGTGCGTTT GCGCGTGGAA ACCCGCGAAG CGGCCACCAT CATTCCGTCG GCTGCCGTGC AGTTCGGCAC CCGCGGCACC TTCGTCTACG TCGTCGACAG CGATAGCAAA GTGAGCATCC GCCAGGTCAC CATCGCGGCC AGCGACGCCG AGCGCAGCCT GGTGGCCGGC GGCGTGCAGC CTGGCGAACG GCTGGTGCTG GAGGGCACCG ACCGCCTGCG CGACGGCAGC GAGGTGGAAG TGGTCGACCC GGACCTGGTG CAGAGCCCCG ACGGCGCGGC CAATGAGCCG GACGCCCGCC AGGGCAAGCG CGACGGCGCA GCACGGAACG GCGCATGA
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Protein sequence | MLGGCQCLWC RLPQEVIRFP AMSNASATSA TTSRQWLIGL TLLAVLFLLL WWFWPSKPQS QPMGRGRFGD MGPVPVRLVE VEQGNFAIEL KALGTVTAYN TVNVRSRVDG ELVKVLFEEG QQVKAGDLLA VIDPRPYQVA LQQAQGALQE NQAQLKNAEL DLQRYKGLFA EDSIAKQTLD TQQALVNQYR GSLQSNQADV ATAKLNLDFT QIRAPISGRL GLRQLDVGNL VSGGDTTPLV VITQTDPIAV IFTIPEGDLP AVLQRRRDGV TLAVEAWDRG ERLKLAEGVL QSLDNQIDTA TGTVKLKARF DNAEQMLFPN QFVNVRLRVE TREAATIIPS AAVQFGTRGT FVYVVDSDSK VSIRQVTIAA SDAERSLVAG GVQPGERLVL EGTDRLRDGS EVEVVDPDLV QSPDGAANEP DARQGKRDGA ARNGA
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