| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2428 |
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| Symbol | |
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| ID | 5108268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2681674 |
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| End bp | 2683203 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640503672 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001187916 |
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| Protein GI | 146307451 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.440095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCC CAGAAGCGAG CGTTGCTCGC GAAACCTTCA ATTCCACCCC GTTCGCCAGC
AGAGCCCGCT GCTACGGTCT GTTCGTGCTG CTGGGGATGC TCGGCGGCTG CATGCTCGGC
CCCGACTATC AGCGCCCCGA GCTGGCAGCG CCGATGCAGT TCAAACAGGT CGCGGGCTGG
AAGGCCGCCA CCCCGGGCGA CGCCCTGGAG CGCGGCGCCT GGTGGGAGCT GTACGGCGAT
GCCGAACTCA ACGCCCTGGT CGAGCGCCTG CACCTGTCCA ACCAGAACCT GGCCGCGGCC
GAAGCGCAGT ACCGCCAGGC CCGCGCGCTG GTGCGTGGCG CGCGGGCGCG CTTCTATCCG
ACCCTGTCCG GCAGCGCCGG GGTGACTCGG GCCGGGCAGG GGGGCGGTGA CAGCACCATC
CGTACCGCCG ATGGCGTCAC CGTCAGCGGC TCCGGTGCGT CGAGCATTTC CAAGAGTTAT
GACCTCAGCC TCAACGCCGC CTGGGAGCTG GATGTCTGGG GCAAGCTGCG CCGCGGCCTG
GAGGCCAGCC GTGCCGAGTT CGAGGCCAGT GCCGCGGACC TGGCCGCGGC GCGCCTGAGC
CTGCAGAGCG AGCTGGTGCA GAACTACCTC CAGTTGCGTG TACTGGATGA GCAGAAGCGC
CTGCTCGATG CCACGGTCGC CGCCTATGCG CGCTCGTTGC GCCTGACCGA AAACCAGTAC
AGGGCCGGCA TCGTGCCCAA ATCCGACGTG ACCCAGGCCA CCACCCAGCT GCGCAGCACC
CAGGCGCAGG CGGTCGATCT CGAGTGGCAG CGCGCCCAAC TGGAACATGC CATCGCCGTG
CTGGTGGGCG TCAGCCCGGC CGAACTGTCC ATCGCCGAGC GCGAAAGCGT GCCGCAGCTG
CCGCCGATTC CGCTGGCATT GCCTTCGCAG CTGCTCGAGC GGCGTCCCGA CATCGCCGCG
GCCGAACGAC GGGTGATGGC GGCCAACGCA CAGATCGGCG TGGCCGAGGC GGCCTGGTTT
CCCGACCTGA CCATCTCGGC CAGCGGCGGC TACCGCGGCA GCAGCTTCGC CGACTGGATC
GAAGTGCCCA ACCGCTTCTG GTCGCTCGGC CCGCAACTGG CGCTGACCCT GTTCGATGGC
GGCACCCGCC GCGCCGAGCT GGAACGCAGC GAGGCCGCCT ACGACCAGAC CGTGGCGCAG
TACCGCCAGG CGGTGCTGGA CGGGTTTCGT GAGGTGGAAG ACTACCTGGT GCAACTGCGC
GTGCTGGAGC AGGAGAGCGA GATCCAGCAG CAGGCACTGG ACGCCGCGCG CGAATCGCTG
CGCCTGATCG AGAACCAGTA CCGCGCCGGC ACCCTGGACT ACAACAGCGT GGTCAATGTG
CAGGCCACCG CGCTGAACAA CGAACGTAGC AACCTCACGC TGCTGGGCAG CCGGCTGACC
GCGAGCGTGC AGCTGATTGC CGCCCTCGGC GGTGGCTGGC AGAGCGAGCA GTTGCGCGAA
ACCGACGAGC GGACGAGCAA AGCACAATGA
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| Protein sequence | MNIPEASVAR ETFNSTPFAS RARCYGLFVL LGMLGGCMLG PDYQRPELAA PMQFKQVAGW
KAATPGDALE RGAWWELYGD AELNALVERL HLSNQNLAAA EAQYRQARAL VRGARARFYP
TLSGSAGVTR AGQGGGDSTI RTADGVTVSG SGASSISKSY DLSLNAAWEL DVWGKLRRGL
EASRAEFEAS AADLAAARLS LQSELVQNYL QLRVLDEQKR LLDATVAAYA RSLRLTENQY
RAGIVPKSDV TQATTQLRST QAQAVDLEWQ RAQLEHAIAV LVGVSPAELS IAERESVPQL
PPIPLALPSQ LLERRPDIAA AERRVMAANA QIGVAEAAWF PDLTISASGG YRGSSFADWI
EVPNRFWSLG PQLALTLFDG GTRRAELERS EAAYDQTVAQ YRQAVLDGFR EVEDYLVQLR
VLEQESEIQQ QALDAARESL RLIENQYRAG TLDYNSVVNV QATALNNERS NLTLLGSRLT
ASVQLIAALG GGWQSEQLRE TDERTSKAQ
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