| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2427 |
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| Symbol | |
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| ID | 5108267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2679476 |
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| End bp | 2681527 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503671 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001187915 |
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| Protein GI | 146307450 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.587287 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGATCG GTAGTTACGA CTATTCCCTG GTGCTGTTGT CGCTGTGCGT GGCGATTCTC
GCCTCCTACA CCGCGCTCGA TCTGGCTGGC CGCATCGCCA GTGCCCGAGG TGTTGCCCGC
TCGCTCTGGA TAGTCGGCGG CGCGCTGGCC ATGGGCATTG GCATCTGGTC CATGCATTTC
GTCGGCATGC TCGCCTTCAG TCTGCCCATC CCGCTGGGTT ACGACCTGAC CATCACCCTG
TTGTCGCTGG GCATCGCCAT GCTCGCCTCG GGCTTTGCCC TGTGGCTGGT CAGCCAGCCC
GAGCTGCCGG CCTGGCAGCT GGGCCTCGGC GCGCTGGCCA TGGGCACGGG CATCGCGGCC
ATGCACTACA TCGGCATGGC GGCGCTGCGC ATGCAGCCGG GGATCGACTA CGACCCGCTG
TTGTTCGGCC TGTCGCTGCT GATCGCTGTG GTCGCCTCGG GCGCGGCGCT ATGGATCGCC
TTCCGCCTGC GTCGCGACAC CCCCTACGTG CGCGTGGCGC GGGCGGGGGC CGCGGTGATC
ATGGGCGTGG CCATCGTCGG CATGCACTTC ACCGGTATGG CGGCGGCGAA CTTCGCCGAG
GGCAGCTACT GCGCGGCAGC CGGCAGCGGG CTGGGCAGCG GCTGGCTGGC CAGCCTGGTG
GTGGTGGTGA CCCTGGCGGT GCTGGCCATC GCCTTGCTCA CCTCGATTCT CGATGCCCGC
CTGGAGGCAC GTACGGCGCT GCTCAGCCAG TCGCTGGCCA GGGCCAACGC GGAGCTCACC
GAGCTGGCCC TGCACGACGG CCTGACCAAA CTGCCCAACC GCCTGCTGCT GGAAGACCGC
ATCGGCCAGA GCATTCTCAA GGTGCAGCGC AACGGCGGCC ATTTCGCCCT GCTGTTCATG
GACCTGGACG GCTTCAAACC GGTCAACGAC GCCTTCGGCC ACCATATCGG CGACCAGTTG
CTGGTGGCCG TGGCCCAGCG CCTGCGCGCC AATCTGCGAG CACAGGACAG CCTGGCACGC
ATCGGCGGCG ACGAGTTCGT GCTGCTCGCC GAGCTGCGCC AGGCCGACGA TGCTGCCAGC
GTGGCGGGGC AGGTGGTCAG CCTGCTGAGT CAGCCGTTCC GGGTGGACGA GCACGAGCTG
CGCGTCTCCA CCAGCGTCGG CATCGCGGTG TACCCGGGGG ACGGCAGCAA TCAGCAGGAA
CTGCTGATCA ATGCCGACGC CGCGATGTAC CACGCCAAGG GGCTGGGCAA GAACGGCTAC
AGCTTCTTCG AACGCTCGAT GAACACCAAT GCGCGCCAAC AACTGCAGCT GCTGCACGAT
CTGCGTGCGG CGCTGGAGCG CGGCGAGTTC CTGCTGTACT ACCAGCCCAA GTTCGCCACC
GGCAGCGAGC GCATGATCGG CGCCGAGGCG CTGCTGCGTT GGCAGCATCC GCAGCAGGGC
TTGCTGACGC CGGATCGTTT CATCGGCCTG GCAGAAAAGA CCGGGCTGAT CATCGCCATC
GGCGACTGGG TGCTGAACGA GGCATGCCGG CAGATGCGCC TGTGGTACGA GCAGGGGCGC
CGCGACTGGC GCGTGGCGGT GAACCTGTCG GCGCTGCAGT TCTGTCATGG TGAGCTGGTC
GAAAGCGTGC GGCGGACCCT GGACCGGCAT GGGCTGCCGG CCAACTGCCT GACCCTGGAG
ATCACCGAGA GCACGGCGAT GCACGATGTG AACGCCAGTC TGGCGATTCT CGAACAGTTG
GCCGGTATGG GCGTGGACAT CGCCATCGAC GATTTCGGCA CCGGTTACTC CAGCCTGCTC
TACCTCAAGC GGCTACCGGC CAACGAGCTG AAGATCGACC GCGGTTTCGT GCGCGACCTG
GAGCACGATG GCGACGACGC CGCCATCGTT TCGGCCATCG TCGCACTGGG GCAGGCACTG
GACCTGCGCA TCGTCGCCGA AGGGGTGGAG ACCCGTCAGC AGCAGGCGTT TCTCACCGAG
CTGGGCTGCG ATTCCCTGCA GGGCTACCTG CTTGGCCAGC CTCTGCCGCC GGAGCATCTG
TCGGCGGCAT GA
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| Protein sequence | MLIGSYDYSL VLLSLCVAIL ASYTALDLAG RIASARGVAR SLWIVGGALA MGIGIWSMHF
VGMLAFSLPI PLGYDLTITL LSLGIAMLAS GFALWLVSQP ELPAWQLGLG ALAMGTGIAA
MHYIGMAALR MQPGIDYDPL LFGLSLLIAV VASGAALWIA FRLRRDTPYV RVARAGAAVI
MGVAIVGMHF TGMAAANFAE GSYCAAAGSG LGSGWLASLV VVVTLAVLAI ALLTSILDAR
LEARTALLSQ SLARANAELT ELALHDGLTK LPNRLLLEDR IGQSILKVQR NGGHFALLFM
DLDGFKPVND AFGHHIGDQL LVAVAQRLRA NLRAQDSLAR IGGDEFVLLA ELRQADDAAS
VAGQVVSLLS QPFRVDEHEL RVSTSVGIAV YPGDGSNQQE LLINADAAMY HAKGLGKNGY
SFFERSMNTN ARQQLQLLHD LRAALERGEF LLYYQPKFAT GSERMIGAEA LLRWQHPQQG
LLTPDRFIGL AEKTGLIIAI GDWVLNEACR QMRLWYEQGR RDWRVAVNLS ALQFCHGELV
ESVRRTLDRH GLPANCLTLE ITESTAMHDV NASLAILEQL AGMGVDIAID DFGTGYSSLL
YLKRLPANEL KIDRGFVRDL EHDGDDAAIV SAIVALGQAL DLRIVAEGVE TRQQQAFLTE
LGCDSLQGYL LGQPLPPEHL SAA
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