| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2424 |
|---|
| Symbol | |
|---|
| ID | 5108264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2675789 |
|---|
| End bp | 2677273 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640503668 |
|---|
| Product | NADH dehydrogenase subunit N |
|---|
| Protein accession | YP_001187912 |
|---|
| Protein GI | 146307447 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.713557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCATC ACGCAGTGGA ATTCACCGCC CAACACCTGA TCGCCCTGTT GCCGCTGCTG
GTCACCTGCA TGAGCGCGAT CGTGGTGATG CTGGCCATCG CCGCCAGGCG CAACCATGCC
CTGACCTTCG TGCTGACCGT GCTCGGTCTC AACCTCGCAC TGCTGTCGCT GCTGCCGGCC
ATGGGCGTGG CGCCCCTGGA GGTTACCGCG CTGCTGCAGA TCGACCGCTT CGCCGGCTAC
TACATGGCCC TGGTGCTCGC CGCCAGCCTG GCCTGCGTGA CGCTGACCCA CGCCTATCTG
GGCGGTCAGT CCGGCAAGGG CTATCCGGGC AACCGCGAGG AGCTGTATCT GCTGATCCTG
CTGTCGGCTG CCGGCGGCCT GGTGCTGGCC AGCGCGCAGC ACCTGGTGGG TCTGTTCATC
GGCCTGGAGC TGCTGTCGGT GCCGACCTAC GGCATGATCG CCTACGCCTT CTTCAACAAG
CGTTCGCTGG AGGCCGGCAT CAAGTACATG GTGCTGTCGG CCGCGGGTTC GGCCTTCCTG
TTGTTCGGCA TGGCGCTGCT CTATGCCGAG GCCGGCGACA TGGGTTTCCG CGCCATCGGC
GCCAGCCTCG CGCAGGGCAG CAGCCTGCTG GTGGAACTGG GCATCGGCAT GATGCTGATC
GGCCTGGCCT TCAAGCTGTC GCTGGTGCCC TTCCACCTGT GGACGCCGGA CGTCTACGAA
GGCGCCCCGG CGCCGGTGGC GGCCTTCCTC GCCACGGCCA GCAAGGTGGC GGTATTCGCC
GTGCTGCTGC GCCTGTACCA GATCTCCCCG GCCACCGCCG GCGGCTGGCT GAACGAGCTG
CTGACGCTGA TCGCCATCGC CTCGATCCTG TTCGGCAACC TGCTGGCGCT GCTGCAGAAC
AACCTCAAGC GCCTGCTGGG TTATTCCTCC ATCGCCCACT TCGGTTACCT GCTGGTGGCG
CTGATCGCCA GTCAGGGCCT GGCCGTGGAA GCCATCGGCG TGTACCTGGC CACCTACGTG
CTGACCAGCC TCGGCGCGTT CGGCGTGATC ACCCTGATGT CCACGCCCTA CAGCGGTCGC
GATGCCGATG CGCTGTACGA GTACCGCGGC CTGTTCTGGC GCCGTCCGTA CCTGACCGCC
GTGCTCACGG TGATGATGCT GTCGCTGGCC GGCATTCCGC TGACGGCCGG CTTCATCGGC
AAGTTCTACG TGATCGCCGC CGGGGTCGAG GCGCAGCTGT GGTGGCTGCT GGGTGCCATG
GTGCTGGGCA GCGCCATCGG CGTGTTCTAT TACCTGCGGG TGATGGTCAC GCTGTTCATG
CGCGAGCCCA ACCTGCACCG CCACGACGCC CCCTTCGACT GGGGCCAGCG CGCTGGCGGC
ATCATGCTGC TGGTGGTGGC TCTGCTCGCC TTCTTCCTCG GCGTGTATCC GCAACCACTG
CTGGAGCTGG TGCATAACGC AGCGCTGGTC GCCCTGGCGC AGTGA
|
|---|
| Protein sequence | MEHHAVEFTA QHLIALLPLL VTCMSAIVVM LAIAARRNHA LTFVLTVLGL NLALLSLLPA
MGVAPLEVTA LLQIDRFAGY YMALVLAASL ACVTLTHAYL GGQSGKGYPG NREELYLLIL
LSAAGGLVLA SAQHLVGLFI GLELLSVPTY GMIAYAFFNK RSLEAGIKYM VLSAAGSAFL
LFGMALLYAE AGDMGFRAIG ASLAQGSSLL VELGIGMMLI GLAFKLSLVP FHLWTPDVYE
GAPAPVAAFL ATASKVAVFA VLLRLYQISP ATAGGWLNEL LTLIAIASIL FGNLLALLQN
NLKRLLGYSS IAHFGYLLVA LIASQGLAVE AIGVYLATYV LTSLGAFGVI TLMSTPYSGR
DADALYEYRG LFWRRPYLTA VLTVMMLSLA GIPLTAGFIG KFYVIAAGVE AQLWWLLGAM
VLGSAIGVFY YLRVMVTLFM REPNLHRHDA PFDWGQRAGG IMLLVVALLA FFLGVYPQPL
LELVHNAALV ALAQ
|
|---|
| |