| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2416 |
|---|
| Symbol | |
|---|
| ID | 5108256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2665849 |
|---|
| End bp | 2667195 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640503660 |
|---|
| Product | NADH-quinone oxidoreductase, F subunit |
|---|
| Protein accession | YP_001187904 |
|---|
| Protein GI | 146307439 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | [TIGR01959] NADH-quinone oxidoreductase, F subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0718255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.148536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA TGACCTCCAT CGCCCCGGCC AACCGCGTAC CGCGCCAGGA GGAAAGTCAC
CCGCTGACCT GGCGCCTGCG CGACGACGCC CAGCCGGTAT GGCTCGAGGA ATACCAGGCC
AAGAACGGCT ACGCCGCCGC GCGCAAGGCG CTGACCGCGA TGGCCCAGGC CGACATCGTG
CAGACCGTCA AGGATTCCGG GCTCAAGGGC CGTGGCGGCG CAGGCTTCCC CACTGGCGTG
AAGTGGGGCC TGATGCCCAC CGACGAATCG CTCGATATCC GCTATCTGCT GTGCAACGCC
GATGAAATGG AGCCCAACAC CTGGAAGGAC CGTCTGCTGA TGGAACAGCT GCCGCACCTG
CTGGTGGAAG GCATGCTGAT CTCGGCGCGG GCGCTCAAGG CCTACCGTGG CTACATCTTC
CTGCGCGGCG AGTACGTCGA AGCGGCGCAC AACCTCAACC GCGCCATCGA GGAAGCCAAG
GCCGCCGGCC TGCTCGGCAG GAACATCTTC GGCTCGGGCT TCGACTTCGA GCTGTTCGTG
CATACGGGGG CGGGGCGCTA CATCTGCGGC GAAGAAACCG CGCTGATCAA CTCCCTGGAA
GGCCGCCGCG CCAACCCGCG CGCCAAGCCA CCCTTCCCCG CCGCCGTCGG CGTATGGGGC
AAGCCCACCT GCGTGAACAA CGTCGAGACC CTGTGCAACG TGCCGGCCAT CGTTCAGCAC
GGGGTGGACT GGTACAAGTC GCTGGCACGC GAAGGCAGCG AAGACCACGG CACCAAGCTG
ATGGGTTTCT CCGGCAAGGT AAAGAACCCC GGCCTGTGGG AGCTGCCGTT CGGCATCAGT
GCGCGCGAGC TGTTCGAAGA GCATGCCGGC GGCATGCGCG ATGGCTACCG GCTCAAATGC
TGGCAGCCCG GCGGCGCCGG CACCGGCTTT CTGCTGCCCG AGCACCTGGA TGCACTGATG
TACGCCGGCG GCATCGCCAA GGTCGGCACG CGCATGGGCA CCGGCCTGGC GCTGGCGGTG
GACGACTCGA TCAACATGGT CTCGCTGCTG CGCAACATGG AGGAGTTCTT CGCCCGCGAA
TCCTGCGGCT GGTGCACCCC CTGCCGCGAC GGCCTGCCCT GGAGCGTGAA GATCCTCCGT
GCCCTGGAGC GCGGCGAAGG CACTCGCGAG GACATCGCCA CCCTGCTCGG CCTGGTCAAC
TTCCTCGGCC CCGGCAAGAC CTTCTGCGCT CACGCGCCAG GCGCCGTGGA GCCGTTGGGC
AGTGCCATCA AGTATTTCCG TGAAGAGTTC GAGGCAGGCG TAGCCCAGGC GACGACCACG
CCCCGCATGC CGGCGGCCGC GAGCTGA
|
|---|
| Protein sequence | MKTMTSIAPA NRVPRQEESH PLTWRLRDDA QPVWLEEYQA KNGYAAARKA LTAMAQADIV
QTVKDSGLKG RGGAGFPTGV KWGLMPTDES LDIRYLLCNA DEMEPNTWKD RLLMEQLPHL
LVEGMLISAR ALKAYRGYIF LRGEYVEAAH NLNRAIEEAK AAGLLGRNIF GSGFDFELFV
HTGAGRYICG EETALINSLE GRRANPRAKP PFPAAVGVWG KPTCVNNVET LCNVPAIVQH
GVDWYKSLAR EGSEDHGTKL MGFSGKVKNP GLWELPFGIS ARELFEEHAG GMRDGYRLKC
WQPGGAGTGF LLPEHLDALM YAGGIAKVGT RMGTGLALAV DDSINMVSLL RNMEEFFARE
SCGWCTPCRD GLPWSVKILR ALERGEGTRE DIATLLGLVN FLGPGKTFCA HAPGAVEPLG
SAIKYFREEF EAGVAQATTT PRMPAAAS
|
|---|
| |