| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2414 |
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| Symbol | |
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| ID | 5108254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2663557 |
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| End bp | 2665338 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503658 |
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| Product | bifunctional NADH:ubiquinone oxidoreductase subunit C/D |
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| Protein accession | YP_001187902 |
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| Protein GI | 146307437 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7
[COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
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| TIGRFAM ID | [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C
[TIGR01962] NADH dehydrogenase I, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0246987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.2214 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAG ACACCGCTGT GTCCATACCG CCTTACCAGG TCGATGACCA GGACGTCATC
GCCGAACTTC GCGCCCGCCT TGGCGACGAC GGCTTCACCC TGCAAGCGAC CCGTACCGGC
ATGCCGGTGC TCTGGGTGAG CCGCGAGCGG CTGCTGGAGG TGCTCAAATG CCTGCGCCAC
CTGCCGCGCC CCTATGTGAT GCTCTACGAC CTGCACGGCG TCGACGAGCG CCTGCGTACC
CAGCGCCGCG GCCTGCCGGA CGCCGATTTC ACCGTGTTCT ACCACCTGAT GTCGCTGGAG
CGTAACAGCG ACCTGATGGT CAAGGTCGCC CTCAGCGAGC GCGATCTCAA CCTGCCGACC
GCCACCGGCA TCTGGCCCAA CGCCAACTGG TACGAGCGCG AGGTCTGGGA CCTGTACGGC
ATCACCTTCC AGGGCCACCC GCACCTGACC CGCATCATGA TGCCGCCGAC CTGGGAAGGT
CACCCGCTGC GCAAGGACTA CCCGGCGCGC GCCACCGAAT TCGATCCGTT CAGCCTGACC
CTGGCCAAGC AGCAGCTCGA GGAAGAAGCC GCGCGCTTCC GCCCCGAAGA CTGGGGCATG
AAGCGTGGTG GCGAGCACGA GGACTACATG TTCCTCAACC TCGGCCCCAA CCACCCGTCC
GCGCACGGCG CGTTCCGCAT CATCCTGCAG CTCGACGGCG AGGAGATCGT CGACTGCGTG
CCGGAGATCG GCTACCACCA CCGTGGCGCC GAGAAGATGG CCGAACGGCA GAGCTGGCAC
AGCTTCATCC CCTACACCGA CCGCATCGAC TACCTCGGCG GGGTGATGAA CAACCTGCCC
TACGTGCTGG CGGTGGAGAA GCTGGCCGGC ATCAAGGTGC CGGACCGGGT CGACTTCATC
CGCGTGATGC TCGCCGAGTT CTTCCGCATC ACCAGCCACC TGCTGTTCCT CGGCACCTAC
ATCCAGGACG TCGGCGCCAT GACCCCGGTG TTCTTCACCT TCACCGACCG CCAGCGCGCC
TACAAGGTGA TCGAGGCCAT CACCGGCTTC CGCCTGCACC CGGCCTGGTA CCGCATCGGC
GGCGTCGCCC ACGACCTGCC GCGCGGCTGG GACAAGCTGG TCAAGGAGTT CGTCGACTGG
CTGCCCAGGC GCCTCGACGA ATACGAGAAG GCGGCGCTGA AGAACAGCAT CCTCAAGGCC
CGCACCATCG GCGTGGCGCA ATACAACACC AAAGAAGCGC TGGAATGGGG CACCACCGGC
GCCGGCCTGC GCGCCACCGG CTGCGACTTC GACCTGCGCA AGGCGCGCCC CTATTCTGGC
TACGAGCACT TCGAGTTCGA GGTGCCGCTG GCCGCCAATG GCGATGCCTA CGACCGCTGC
ATGGTGCGCG TGGAAGAGAT GCGCCAGAGC ATCCGCATCA TCGACCAGTG CCTGAAGAAC
ATGCCGGAAG GCCCGTACAA GGCCGATCAC CCGCTGACCA CGCCGCCGCC TAAAGAACGC
ACGCTGCAGC ACATCGAAAC CCTGATCACC CACTTCCTGC AGGTTTCCTG GGGGCCGGTC
ATGCCGGCGG GCGAAGCCCT GCAGATGATC GAGGCGACCA AGGGCATCAA CAGCTACTAC
CTGACGAGCG ACGGCAGCAC CATGAGCTAC CGCACCCGGA TTCGCACACC CAGCTTCGCC
CACCTGCAGC AGATCCCCTC GGTGATCCGC GGCAGCATGG TGGCGGACCT GATCGCCTAC
CTGGGCAGTA TCGACTTCGT CATGGCCGAC GTGGACCGCT GA
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| Protein sequence | MTADTAVSIP PYQVDDQDVI AELRARLGDD GFTLQATRTG MPVLWVSRER LLEVLKCLRH
LPRPYVMLYD LHGVDERLRT QRRGLPDADF TVFYHLMSLE RNSDLMVKVA LSERDLNLPT
ATGIWPNANW YEREVWDLYG ITFQGHPHLT RIMMPPTWEG HPLRKDYPAR ATEFDPFSLT
LAKQQLEEEA ARFRPEDWGM KRGGEHEDYM FLNLGPNHPS AHGAFRIILQ LDGEEIVDCV
PEIGYHHRGA EKMAERQSWH SFIPYTDRID YLGGVMNNLP YVLAVEKLAG IKVPDRVDFI
RVMLAEFFRI TSHLLFLGTY IQDVGAMTPV FFTFTDRQRA YKVIEAITGF RLHPAWYRIG
GVAHDLPRGW DKLVKEFVDW LPRRLDEYEK AALKNSILKA RTIGVAQYNT KEALEWGTTG
AGLRATGCDF DLRKARPYSG YEHFEFEVPL AANGDAYDRC MVRVEEMRQS IRIIDQCLKN
MPEGPYKADH PLTTPPPKER TLQHIETLIT HFLQVSWGPV MPAGEALQMI EATKGINSYY
LTSDGSTMSY RTRIRTPSFA HLQQIPSVIR GSMVADLIAY LGSIDFVMAD VDR
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