| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2399 |
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| Symbol | mnmA |
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| ID | 5108239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2647440 |
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| End bp | 2648552 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503643 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_001187887 |
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| Protein GI | 146307422 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00300816 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0915996 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCAC CTAGCACCCA ACGCGTGATC GTCGGCATGT CCGGCGGCGT CGACTCGTCC
GTTTCCGCCC TGTTGCTGAT GGAGCAGGGT TACCAGGTCG AAGGCCTGTT CATGAAGAAC
TGGGACGAAG ACGACGGCAC CGAATACTGC ACTGCCATGG ACGACCTGGC CGACGCCCAG
GCGGTATGCG ACCGCATCGG CATCAAGCTG CACACCGCCA ACTTCGCCGC CGAATACTGG
GACAACGTGT TCGAGCATTT CCTGGCCGAA TACAAAGCCG GACGTACGCC GAATCCGGAC
ATCCTGTGCA ACCGCGAGAT CAAGTTCAAA GCCTTCCTCG ACTACGCCCT GTCGCTCGGT
GCCGACCTGA TCGCCACCGG CCACTACGTG CGCCGCCGCG ACATCGACGG CCGTACCGAG
CTGCTCAAGG GCCTGGACCC GAACAAGGAC CAGAGCTACT TCCTGCATGC CGTCGGCGGC
GAGCAGATCG CCAAGACCCT GTTCCCGGTC GGCGAGCTGG AAAAACCGCA GGTACGCGCC
ATTGCCGAAA AGTACGAGCT GGCCACGGCG AAGAAGAAGG ACTCCACCGG TATCTGCTTC
ATTGGCGAAC GCCGCTTCAG CGACTTCCTC AAGCAGTACC TGCCGGCGCA GCCGGGTGAT
ATCGAAACCA CCGAAGGTCA GGTCATCGGC CGTCATCACG GCCTGATGTA CCACACCATC
GGCCAGCGCC AGGGCCTCGG CATCGGCGGT CTCAAGGACG CCAGCGACGA TCCCTGGTAC
GTGCTGCGCA AGGACCTGAC GCGCAACGTG CTGATCGTCG GTCAGGGCAA CGAACACCCC
TGGCTGTTCT CCCGCGCCCT GCTCGCCTCG GACATCTACT GGGTCAACCC CGTGGACCTG
AGCACCCCGC GCCGCCTCAC GGCCAAGGTG CGCTACCGCC AGAGCGACCA GGCCTGCACT
CTGGAGAAGA CCGAGAACGG CTATCGCGCC GTGTTCGACG AGCCGCAGCG CGCCGTCACC
CCAGGCCAGT CCGTGGTGTT CTACGACGGT GAGGTGTGCC TCGGCGGCGG CGTGATCGAA
ACCGCGCAAG CCTGGTACGA GGACGCCCGA TGA
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| Protein sequence | MQAPSTQRVI VGMSGGVDSS VSALLLMEQG YQVEGLFMKN WDEDDGTEYC TAMDDLADAQ
AVCDRIGIKL HTANFAAEYW DNVFEHFLAE YKAGRTPNPD ILCNREIKFK AFLDYALSLG
ADLIATGHYV RRRDIDGRTE LLKGLDPNKD QSYFLHAVGG EQIAKTLFPV GELEKPQVRA
IAEKYELATA KKKDSTGICF IGERRFSDFL KQYLPAQPGD IETTEGQVIG RHHGLMYHTI
GQRQGLGIGG LKDASDDPWY VLRKDLTRNV LIVGQGNEHP WLFSRALLAS DIYWVNPVDL
STPRRLTAKV RYRQSDQACT LEKTENGYRA VFDEPQRAVT PGQSVVFYDG EVCLGGGVIE
TAQAWYEDAR
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