| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2397 |
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| Symbol | |
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| ID | 5108237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2644531 |
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| End bp | 2646759 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503641 |
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| Product | isocitrate dehydrogenase, NADP-dependent |
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| Protein accession | YP_001187885 |
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| Protein GI | 146307420 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
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| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.942581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0892636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCC CTTCGAAGAT CATCTACACC TTCACCGACG AAGCTCCGGC CCTTGCTACC
TATTCGCTTC TGCCCATTGT AGAAGCCTTT GCCGCATCGG CTGACATCTC CGTTGAAACC
CGCGACATCT CTCTTGCTGG ACGGATCCTG GCAAGCTTTG CTGACCGCCT GGACGCCGAC
AAGCGCATCG ATGACGACCT GGCCAAGCTG GCCGAGCTGA CCCTGCAGCC GGACGCCAAC
ATCATCAAAC TGCCGAACAT CAGCGCCTCC GTCCCCCAGC TCAAGGCCGC CATCGCCGAG
CTGCAGGCCC AGGGCTACAA CATCCCCGAT TTCCCGGAAG ATCCGCAGAG CGAAGAAGAC
AAGGAAGTGC GCGCACGCTA CGCCAAGGTG CTGGGCAGCG CGGTGAACCC GGTGCTGCGC
GAAGGCAACT CCGACCGCCG CGCACCGGCC GCGGTCAAGG CCTATGCGCG CAAGCACCCG
CACAGTATGG GCAAGTGGAG CATGGCTTCG CAGTCCCACG CCGACTACAT GCGCGGCGGC
GACTTTTTCT CCAGCGAGCA GTCGATCACC ATGGCCAAGG CCGGTGACGT GCGCATCGAG
TTCGTCGGCA AGGACGGCAA GGTCGAGGTC AAGAAGCAAC TGGCCCTGCA GGAAGGCGAA
GTGTTCGACA GCATGTTCAT GAGCTGCCGC AAGCTGCGTG ACTTCTTCGA GAAGACCCTG
CAGGACTGCA AGGAAACCGG CGTGATGTGG TCCCTGCACG TCAAGGCGAC CATGATGAAG
GTCTCCCACC CGATCGTCTT CGGCCACGCC GTCAGCGTTT ACTACAAGGA CGTGTTCGAC
AAGTACGGCG AGCTGTTCAA GGAGCTGGGC GTCAACCCGA ACAACGGCAT CAGCAGTGTC
TACGACAAAA TCAAGGCCCT GCCCGCTTCG CAGCAGGAAG AGATCCTGCA CGACATCCAC
GAGGTCTACA GCCATCGCCC GGAAATGGCC ATGGTCGACT CGGTCAAGGG CATCACCAAC
CTGCACATCC CGAGCGACGT GATCGTCGAC GCCTCGATGC CGGCGATGAT CCGCAACTCC
GGCCAGATGT GGGGCAAGGA CGGCAAGCAG AAAGACACCA AGGCGGTCAT GCCTGAGAGC
ACCTATGCGC GCATCTATCA GGAAATGATC AACTTCTGCA AAACCAACGG TGCGTTCGAC
CCGACCACCA TGGGCAGCGT GCCGAACGTC GGCCTGATGG CGCAGAAGGC CGAGGAATAC
GGCTCCCACG ACAAGACCTT CGAAATGACC GCTGACGGCA CCATGCGCGT CGTCGCTGCC
GACGGCACCG TGCTGATGCA GCACCAGGTC GAAGCCGGCG ACATCTGGCG CGCCTGCCAG
ACCAAGGACG CGCCGATCCG CGACTGGGTC AAGCTGGCCG TTACCCGCGC CCGTCAGTCC
AACACCCCGG CGATCTTCTG GCTGGACCCG GAGCGCGCTC ACGATCGCGA GCTGCAGAAG
AAGGTCGAGC TGTACCTCAA GGACCACGAC CTGACTGGCC TGGACATCCG CATGATGGGC
TACAACGAAG CCATCCGCGT ATCCATGGAG CGCATGATTC GTGGCCTGGA CACCATCTCG
GTGACCGGCA ACGTACTGCG TGACTACCTG ACCGACCTGT TCCCGATCAT GGAGCTGGGT
ACCTCGGCCA AGATGCTGTC CATCGTTCCG CTGATGGCTG GCGGCGGCAT GTACGAGACC
GGTGCCGGCG GCTCGGCACC CAAGCACGTG CAGCAGCTGG TCGAAGAGAA CTACCTGCGC
TGGGATTCCC TGGGCGAGTT CCTGGCCCTG GCCGTGTCGC TGGAAGAAAC CGGCATCAAG
ACCAACAACG CCAAGGCCAA GGTACTGGGC AAGACCCTGG ATCAGGCCAC CGGCAAGCTG
CTGGACAACA ACAAGTCCCC GGCGCGCAAG GTGGGTGAGA TCGACAACCG CGGCAGCCAC
TTCTACCTGG CGCTGTACTG GGCCCAGGCC CTGGCCGAGC AGAATGACGA TGCCGAGCTG
AAGGCTCACT TCGCCCCGCT GGCCAAGCAG CTGACCGAGC AGGAAGCGAC CATCGTTGGC
GAACTGGCTG CCGTACAGGG CAAGCCGGTC GACATCGGCG GCTACTACCG CTCCAACCCC
GAGCTGACCA GCCAGGTGAT GCGCCCCAGC GCCACCTTCA ACGCAGCCCT GGCTGCGCTG
AATGCCTGA
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| Protein sequence | MSTPSKIIYT FTDEAPALAT YSLLPIVEAF AASADISVET RDISLAGRIL ASFADRLDAD
KRIDDDLAKL AELTLQPDAN IIKLPNISAS VPQLKAAIAE LQAQGYNIPD FPEDPQSEED
KEVRARYAKV LGSAVNPVLR EGNSDRRAPA AVKAYARKHP HSMGKWSMAS QSHADYMRGG
DFFSSEQSIT MAKAGDVRIE FVGKDGKVEV KKQLALQEGE VFDSMFMSCR KLRDFFEKTL
QDCKETGVMW SLHVKATMMK VSHPIVFGHA VSVYYKDVFD KYGELFKELG VNPNNGISSV
YDKIKALPAS QQEEILHDIH EVYSHRPEMA MVDSVKGITN LHIPSDVIVD ASMPAMIRNS
GQMWGKDGKQ KDTKAVMPES TYARIYQEMI NFCKTNGAFD PTTMGSVPNV GLMAQKAEEY
GSHDKTFEMT ADGTMRVVAA DGTVLMQHQV EAGDIWRACQ TKDAPIRDWV KLAVTRARQS
NTPAIFWLDP ERAHDRELQK KVELYLKDHD LTGLDIRMMG YNEAIRVSME RMIRGLDTIS
VTGNVLRDYL TDLFPIMELG TSAKMLSIVP LMAGGGMYET GAGGSAPKHV QQLVEENYLR
WDSLGEFLAL AVSLEETGIK TNNAKAKVLG KTLDQATGKL LDNNKSPARK VGEIDNRGSH
FYLALYWAQA LAEQNDDAEL KAHFAPLAKQ LTEQEATIVG ELAAVQGKPV DIGGYYRSNP
ELTSQVMRPS ATFNAALAAL NA
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