| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2393 |
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| Symbol | |
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| ID | 5108233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2639674 |
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| End bp | 2641944 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503637 |
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| Product | ATP-dependent Clp protease ATP-binding subunit ClpA |
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| Protein accession | YP_001187881 |
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| Protein GI | 146307416 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0793995 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAATC GAGAGCTCGA AGTCACCCTC AATCTGGCTT TCAAGGAGGC CCGTGCCAAA
CGTCATGAGT TCATGACGGT CGAGCATCTG CTGCTCGCCT TGCTGGATAA CGAAGCTGCG
GCCAGTGTAC TGCGGGCCTG CGGGGCCAAT CTCGACAAGC TGCGCCATGA TCTGCAGGAG
TTCATCGACT CCACCACGCC ATTGATTCCG CAGCACGACG AGGAGCGCGA AACCCAGCCG
ACCCTGGGCT TCCAGCGCGT GCTGCAGCGT GCGGTGTTCC ACGTGCAGAG TTCCGGCAAG
CGTGAAGTGA CCGGCGCCAA CGTGCTGGTG GCGATCTTCA GCGAGCAGGA AAGTCAGGCC
GTGTTCCTGC TCAAGCAGCA GAGCGTGGCC CGTATCGACG TGGTCAACTA CATCGCTCAC
GGTATTTCCA AGGTCCCTGG CCATGGCGAT CAGCATGAGC ACGACCAGGA CATGCAGGAC
GAGGAGGGTG GCGAGTCGTC CACCTCCGGC AACCCGCTGG ATGCCTACGC CAGCAACCTC
AACGAGCTGG CGCGCCAGGG ACGTATCGAT CCGCTGGTCG GTCGCGAGCA TGAGGTCGAG
CGCGTGGCGC AGATTCTCGC CCGTCGGCGC AAGAACAACC CGCTGCTGGT GGGTGAGGCC
GGTGTCGGCA AGACCGCCAT CGCCGAGGGC CTGGCCAAGC GCATCGTCGA CGAGCAGGTG
CCCGATCTGC TGGCCGACAG CGTGGTCTAT TCCCTGGACC TCGGTGCGTT GCTGGCCGGG
ACCAAGTACC GCGGCGACTT CGAGAAGCGC TTCAAGGCGC TGCTCAATGA GCTGCGCAAG
CGTCCGCACG CCATTTTGTT CATCGACGAG ATTCACACCA TCATCGGTGC CGGTGCGGCA
TCGGGTGGGG TGATGGATGC CTCCAACCTG CTCAAGCCGA TGCTGTCCTC CGGCGAGATT
CGCTGCATCG GCTCCACCAC CTTCCAGGAG TTTCGCGGCA TCTTCGAGAA GGATCGCGCT
TTGGCACGGC GCTTCCAGAA GGTCGACGTG GTCGAACCGT CGGTGGAGGA CACCGTCGGC
ATCCTCAAGG GGCTCAAGGC GCGTTTCGAG CAGCATCACC ACATCGAGTA CAGCGATGAG
GCCCTGCGCG CCGCGGCCGA GCTGGCTGCG CGCTACATCA ACGACCGGCA CATGCCGGAC
AAGGCTATCG ACGTGATCGA CGAAGCCGGC GCCTATCAGC GCCTGCAGCC GGAAGACAAG
CGTGTGCCGC GCATCGACGT GGCGCAGGTC GAGGACATCG TCGCCAAGAT CGCGCGGATT
CCGCCGAAGC ATGTGTCCAG CTCCGACAAG GAGCTGCTGC GCAACCTCGA GCGTGATCTC
AAGCTCACCG TGTTCGGTCA GGATGCCGCC ATCGATTCGC TGGCCACCGC GATCAAGCTG
TCGCGCGCCG GGCTCAAGGC GCCGGACAAG CCGGTCGGCT CCTTCCTCTT CGCCGGTCCC
ACCGGCGTGG GCAAGACCGA GGCGGCTCGT CAGTTGGCCA AGGCCATGGG CATCGAGCTG
GTGCGCTTCG ACATGTCCGA GTACATGGAG CGGCATACCG TTTCCCGTCT GATCGGCGCG
CCGCCCGGCT ACGTCGGTTT CGATCAGGGC GGTCTGCTCA CCGAGGCCAT CACCAAGCAG
CCGCACTGCG TGCTGCTGCT CGACGAGATC GAGAAGGCGC ATCCGGAAGT CTTCAACCTG
CTGCTGCAGG TCATGGACCA CGGCACGCTG ACTGACAACA ACGGGCGCAA GGCGGATTTC
CGCAACGTGA TTCTGATCAT GACCACCAAC GCCGGTGCGG AAACCGCCTC GCGTGCGTCG
ATCGGCTTCA CCCAGCAGGA TCATTCCACC GATGCCATGG AAGTGATCAA GAAGAGCTTC
ACGCCGGAGT TCCGCAACCG TCTGGACACC ATCATCCAGT TTGGTCGCCT CAGTCACGAG
ACGATCAAGA GCATCGTCGA CAAGTTCCTC ACCGAACTGC AGGCGCAGCT GGAAGACAAG
CGCGTCACCC TGGAGGTCAG CGATGCGGCG CGCAGCTGGC TGGCCGAGCG TGGTTACGAC
GTGATGATGG GCGCCAGGCC GATGGCGCGT TTGATCCAGG ACAAGATCAA GCGCCCTCTG
GCAGAGGAAA TCCTCTTCGG CGAGCTGGCC GAGCATGGCG GCGTGGTGCA CATCGACATC
AAGGATGGCG AGCCGAGCTT CGAGTACGAG ACGACGGCGG AAGTCGCCTG A
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| Protein sequence | MLNRELEVTL NLAFKEARAK RHEFMTVEHL LLALLDNEAA ASVLRACGAN LDKLRHDLQE
FIDSTTPLIP QHDEERETQP TLGFQRVLQR AVFHVQSSGK REVTGANVLV AIFSEQESQA
VFLLKQQSVA RIDVVNYIAH GISKVPGHGD QHEHDQDMQD EEGGESSTSG NPLDAYASNL
NELARQGRID PLVGREHEVE RVAQILARRR KNNPLLVGEA GVGKTAIAEG LAKRIVDEQV
PDLLADSVVY SLDLGALLAG TKYRGDFEKR FKALLNELRK RPHAILFIDE IHTIIGAGAA
SGGVMDASNL LKPMLSSGEI RCIGSTTFQE FRGIFEKDRA LARRFQKVDV VEPSVEDTVG
ILKGLKARFE QHHHIEYSDE ALRAAAELAA RYINDRHMPD KAIDVIDEAG AYQRLQPEDK
RVPRIDVAQV EDIVAKIARI PPKHVSSSDK ELLRNLERDL KLTVFGQDAA IDSLATAIKL
SRAGLKAPDK PVGSFLFAGP TGVGKTEAAR QLAKAMGIEL VRFDMSEYME RHTVSRLIGA
PPGYVGFDQG GLLTEAITKQ PHCVLLLDEI EKAHPEVFNL LLQVMDHGTL TDNNGRKADF
RNVILIMTTN AGAETASRAS IGFTQQDHST DAMEVIKKSF TPEFRNRLDT IIQFGRLSHE
TIKSIVDKFL TELQAQLEDK RVTLEVSDAA RSWLAERGYD VMMGARPMAR LIQDKIKRPL
AEEILFGELA EHGGVVHIDI KDGEPSFEYE TTAEVA
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