Gene Pmen_2387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2387 
SymbollolA 
ID5108227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2633458 
End bp2634084 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content61% 
IMG OID640503631 
Productouter-membrane lipoprotein carrier protein 
Protein accessionYP_001187875 
Protein GI146307410 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2834] Outer membrane lipoprotein-sorting protein 
TIGRFAM ID[TIGR00547] periplasmic chaperone LolA 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0116989 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGTTA TTCGCCTGCT GATGCTGGCT GCTCTGAGTT TTACCCTGCT GACCGCCCAG 
GCCGACGAAG AGGCGGCCAC CAAGCGCCTG ACCGAGCTGC TCAGCCAGGC GCAGACCATC
AGCGCGCGTT TCTCCCAACT GACCCTCGAC GCCAGCGGCA CGCAGCTGCA GGAGACCGCC
GGGCAACTGG TGCTCAAGCG TCCGGGCCTG TTCCGCTGGC ACACCGATGA GCCCATGGAG
CAGCTGCTGG TCTCCAACGG CCAGAAGGTC TGGCTGTACG ACCCGGATCT GGAACAGGTG
ACCATCCAGA GCCTCGATCA GCGCCTGACT CATACGCCGG CGCTGCTGCT GTCCGGCGAC
GTGTCGCAGA TACGCGAGAA CTTCGAGATC GACTACAAGG AAGGCGGCAG TGTGGTCGAC
TTCATCCTCA AGCCCAAGGC CAAGGACAGC CTGTTCGACA GCCTGCGCCT GTCGTTCCGC
AATCGCATGC TCAACGACAT GCAACTGATC GACAGCATCG GCCAGCGCAC CAACATCCTG
TTCCTCAATG TGAAGATGAA CGAGCCGGTG GAAGACCATC TGTTCACCTT CGACATTCCG
GAAGGCGCGG ACGTCATCCA GGAGTAA
 
Protein sequence
MRVIRLLMLA ALSFTLLTAQ ADEEAATKRL TELLSQAQTI SARFSQLTLD ASGTQLQETA 
GQLVLKRPGL FRWHTDEPME QLLVSNGQKV WLYDPDLEQV TIQSLDQRLT HTPALLLSGD
VSQIRENFEI DYKEGGSVVD FILKPKAKDS LFDSLRLSFR NRMLNDMQLI DSIGQRTNIL
FLNVKMNEPV EDHLFTFDIP EGADVIQE