Gene Pmen_2342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2342 
Symbol 
ID5108577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2586208 
End bp2587350 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content67% 
IMG OID640503584 
Producthypothetical protein 
Protein accessionYP_001187832 
Protein GI146307367 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0301397 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGTGC CTTCGCTGTT CGACAGCTTC TTCATGGGCG GTTTCGAGTG TTCGACCCAC 
CGTCGACAGG ACGGACGGCG GCTCGACCTG ATCGAGAACA CCGCCCACCA GCGCTGGGCA
GCCGAAGACT ACACGGCGCT GCGTCAGCAG GGCCTGCGCA GCGCACGGGA TGGTTTGCGC
TGGCATCTGA TCGAGGCGAC TCCCGGTCAT TACGACTGGT CCAGCTTCCT GCCGCAGTTG
CAGGCCGCCG AACAGGCTGG CGTGCAGGTC ATCTGGGATC TGTGCCATTA CGGCTGGCCT
GACCACATCG ATATCTGGCG CCCGCAGTTC GTCGAGCGCT TCGCCCGCTT CGCCGCCGCT
GCGGCCCGCC TGGTGCGCGA GCACAGCGAC CGCGTGCCGT TCTACTCGCC GCTCAACGAG
ATGTCCTTCT GGGCCTGGGC CGGCGGTGAA GTCGGCTATT TCTCGCCCCT GGCGACAGGC
CGCGGCGACG AGCTCAAGCA CCAGCTGATA CGCGCCAGCA TCGCGGCCAT CGAGGCGATC
CGCGAGGTCG ATCCGCGAGC GCGTTTCGTG CAGGTCGACC CCGTCATCCA TGTCGTCGCC
AGGAGCAACC GCGCCAGCGA GCAGGAGGAT GCCGAGCGCT ATCGCCTGTC GCAGTTCCAG
GCCTGGGACA TGCTCACGGG CATGCAATGG CCGGGGCTCG GCGGCAAACC GGAGTATCTG
GATATCGTCG GCGTCAACTA CTACCCCGAC AACCAGTGGT TTCTCGGCGG CGATACGCTG
TGGCGAGGCG AGCCGCACTA CCGCCCCTTC AGTGGCATTC TCGCCGAGGT CCACCAGCGC
TACCGCAGGC CCATCCTGGT GGCCGAAACC GGCGCCGAGG GCGACCAGCG TGTCGACTGG
CTGCGCTACG TCGGCGAGCA GGTGCATCTG GCCCTGCAAC GCGGCCTGCC GCTGGAAGGC
ATCTGCCTGT ACCCGGTCGT CGACTATCCC GGCTGGATCG ACGACCGCCA TTGCCCGACT
GGTCTGTTCG GCTTCGCCGA CGAGCTGGGC CGGCGCCCCG TGCACGCCCC TCTGGCCATG
GAGCTGCAGC GCCAGCGAAC GCTGTTCGAG GCGCTGGCCG GACAACTGGC CCGGCAGGCA
TGA
 
Protein sequence
MHVPSLFDSF FMGGFECSTH RRQDGRRLDL IENTAHQRWA AEDYTALRQQ GLRSARDGLR 
WHLIEATPGH YDWSSFLPQL QAAEQAGVQV IWDLCHYGWP DHIDIWRPQF VERFARFAAA
AARLVREHSD RVPFYSPLNE MSFWAWAGGE VGYFSPLATG RGDELKHQLI RASIAAIEAI
REVDPRARFV QVDPVIHVVA RSNRASEQED AERYRLSQFQ AWDMLTGMQW PGLGGKPEYL
DIVGVNYYPD NQWFLGGDTL WRGEPHYRPF SGILAEVHQR YRRPILVAET GAEGDQRVDW
LRYVGEQVHL ALQRGLPLEG ICLYPVVDYP GWIDDRHCPT GLFGFADELG RRPVHAPLAM
ELQRQRTLFE ALAGQLARQA