| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2332 |
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| Symbol | |
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| ID | 5108567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2574325 |
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| End bp | 2576550 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503574 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001187822 |
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| Protein GI | 146307357 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00996193 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0126654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATCA CGCAAAGCAC AAGAGCGGTT CAGGTCAACG GACCACTGGG GCCCAACGTC
CTGCTGTTGC AGGGCATGGA TGGCAGCGAA GAACTGGGCC GCCCGTTCCA GTACCACCTG
GAGCTGACCT CGGAAGATGG CTCGGTGAAG TTCGACCAGC TGCTGGGCAA GCCCATGGGG
CTGTCGCTGG AGCTGCCCGA TGGCGGCGAT CGTTACTTCC ACGGCATCGT CTGCGCCTGC
CGACAGACCG TGGGCATCGG CCAGTTCGCC GGCTATCAGG TCACCCTGCG ACCATGGCTG
TGGCTGCTGA GCCGGACCTC CGACTGCCGC ATCTTCCAGA ACAAGACGGT GCCGGACATC
ATCAAGCAGG TGTTCCGCGA CCTGGGTTTT TCCGATTTCG AAGACAGCCT CAGCCGCAGC
TACCGGGAGT GGGAGTACTG CGTGCAGTAC CGGGAAACCA GCTTCGATTT CGTCAGCCGG
CTGATGGAAC AGGAAGGCAT CTACTACTAC TTCCGCCACG AGAAGGCGCG CCACGTGTTG
GTGCTGGCCG ACGCCTACGG CGCCCATTCG ACGGTGGACG GCTACGCCAG CGTGCCGTTC
TACCCGCCCG AACTGCAGAT GCGCGAGCGC GACCACTTCT ACGACTGGCA GCTGGCGCGC
GAGGTGCAGC CCGGCTCCCT GGCGCTGACC GATTACGACT TCCAGCGCCC CAGCGCCAGC
CTCGACGTGC GTTCCAGCGT CTCGCGCAGC CATGGCAACG CCGAATACCC GCTGTTCGAC
TATCCCGGCG AGTATGTGCA AAGCAAGGAC GGCGAGCACT ACGCACGCAC CCGCATCGAG
GCCATCCATA CGCAGTTCGA GCGCGTGCAG CTGCGCGGCC GTGCCCGCGG CCTGGGCTCG
GGCCATCTGT TCAAGCTCAG CGGTTACGAG CGCGCCGACC AGAACCGCGA GTACCTGGTG
GTCGGTGCGC GCTACCGCAT CCGCCAGGAG GCCTATGAGA CCGGCTTCGG CGACAACCTC
GAGCAGTTCA CCAGCGAGCT GGACTGCATG GACGCCAGCC AGGCCTTTCG CCCCCTGCCG
CTGACCCCCA TGCCCATCGT GCGCGGGCCG CAGACCGCCA TGGTGGTCGG CCCCAGCGGC
GAGGAGATCT GGACCGACCA GTACGGCCGG GTCAAGGTGC ACTTCTACTG GGACCGCCAC
GACCAGTCCG ACGAGAACAG CTCCTGCTGG ATGCGCGTGT CGCAGGCCTG GGCCGGCAAG
AACTGGGGCG CGATCCAGAT TCCGCGCATC GGCCAGGAGG TGATCGTCAG CTTCCTCGAA
GGCGATCCGG ATCGGCCGAT CATCACCGGT CGCGTTTACA ACGCCGAGCA GACGGTGCCC
TACGACCTGC CCGCCAACGC CACCCAGAGC GGCGTGAAGA GCCGTTCGAG CAAGGAAGGC
ACGCCGGCTA ACTTCAACGA GATCCGCATG GAGGACAAGA AAGGCGAGGA GCAGCTGTTC
ATCCATGCGG AAAAGAACCA GGACATCGAG GTCGAGAACG ACGAGACCCA CTGGGTCGGC
CACGACCGCA CCAAGACCAT CGACAACGAC GAAACGGTGC ACGTCAAACA CGACCGTACC
GAGACGGTGG ACAACAACGA AACCATCACC ATCGGTGTGG ACCGCACGGA GAAGGTCGGC
AACAACGAGA CCATCACCAT CGGCGTCGAT CGCACCGAAA AAGTCGGCAG CAACGAGAAG
ATCAGCATCG GCAACAACCG CACCGAGGAT GTCGGCAGCG ACGAGAGCAT CACCATCGGC
GCCAACCGCA CCGAGAAGGT CGGCAGCAAC GAGAAGATCA GCATCGGCAA CAACCGCACC
GAGGACGTCG GCAGCGACGA GAGCATCACC ATCGGCAGCA ACCGTACCGA GAAGGTCGGC
AAGAACGAAG ACATCAGCAT CGGCAGCAAC CAGAGCACCA GCATCGGCAA GAACGAGTCG
CGCAGCGTCG GTCAGAGTCG CGACAGCAGC ATCGGCAAGG ACGACAGCCT GAGCGTGGGC
AAGAACTTCT CCCTGAACGC GGGCGACTCC ATCACCCTGA CCACCGGCTC GGCCAGCATC
ACCATGAAGA AGGACGGCAC CATCACCATT CGCGGCAAGA ACATCACCAT CGACGGCTCC
GGGGCGATCA ACGTCAAGGC GAGCAAGAAC GTGGTGGTCA AGGGGCAGAA GATTCTGCAG
AACTAG
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| Protein sequence | MAITQSTRAV QVNGPLGPNV LLLQGMDGSE ELGRPFQYHL ELTSEDGSVK FDQLLGKPMG
LSLELPDGGD RYFHGIVCAC RQTVGIGQFA GYQVTLRPWL WLLSRTSDCR IFQNKTVPDI
IKQVFRDLGF SDFEDSLSRS YREWEYCVQY RETSFDFVSR LMEQEGIYYY FRHEKARHVL
VLADAYGAHS TVDGYASVPF YPPELQMRER DHFYDWQLAR EVQPGSLALT DYDFQRPSAS
LDVRSSVSRS HGNAEYPLFD YPGEYVQSKD GEHYARTRIE AIHTQFERVQ LRGRARGLGS
GHLFKLSGYE RADQNREYLV VGARYRIRQE AYETGFGDNL EQFTSELDCM DASQAFRPLP
LTPMPIVRGP QTAMVVGPSG EEIWTDQYGR VKVHFYWDRH DQSDENSSCW MRVSQAWAGK
NWGAIQIPRI GQEVIVSFLE GDPDRPIITG RVYNAEQTVP YDLPANATQS GVKSRSSKEG
TPANFNEIRM EDKKGEEQLF IHAEKNQDIE VENDETHWVG HDRTKTIDND ETVHVKHDRT
ETVDNNETIT IGVDRTEKVG NNETITIGVD RTEKVGSNEK ISIGNNRTED VGSDESITIG
ANRTEKVGSN EKISIGNNRT EDVGSDESIT IGSNRTEKVG KNEDISIGSN QSTSIGKNES
RSVGQSRDSS IGKDDSLSVG KNFSLNAGDS ITLTTGSASI TMKKDGTITI RGKNITIDGS
GAINVKASKN VVVKGQKILQ N
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