| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2329 |
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| Symbol | |
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| ID | 5108564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2568739 |
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| End bp | 2570598 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503571 |
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| Product | hypothetical protein |
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| Protein accession | YP_001187819 |
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| Protein GI | 146307354 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0250142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0432073 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCGC GCCTGCTCGA CTATTACAAC CAGGAGCTGC AGCACATCCG CGAAAGCGCG
GCGGAGTTCG CCGCCGAGTT CCCCAAGATC GCCAGTCGCC TGACGCTGTC CGGCATCGAT
TGCGCCGACC CCTATGTCGA AAGACTGCTG GAGGGTTTCG CCTACCTCAC CGCCCGTGTC
CATCTGAAAC TGGACGCCGA ATACCCCACA TTCACCCATA ACCTGCTGGA AATCGCCTAC
CCCCACTACC TGGCGCCGAC ACCGTCGGTG ACCGTGGTGC AGCTGTGCGC CGACCCGGAC
GAAGGCTCGC TGGCCAGTGG CTTCCGGATC GAGCGCGGCG CTGCGCTGCG AGGCCAGCTG
GGGCACGAGG AACAGACCGC CTGCGAATAC CGCACCAGCC ATGACGTGAC GCTGTGGCCG
CTGGAAGTCA GCCGCGCCGA GTACTTCGGC AACCCGGCCA CCGCCCTGGG CCGCCTGGCC
GCGGCAGAAC CCAGGGCCAA GGCCGGCCTG CGCATTCGTC TCAAATGTGG CGCCGGCATG
CCCTTCAAGG CCCTGGCGCT GGACAGCCTG CCACTGTTTC TCGCCGGGGC GGACGAGCAG
CCGTTTCGCC TGTATGAGCA ACTGCTGGGC AATGCCTGCG CCCTGTTCAT CAAGAGCGTC
GACGGCGAAT GGGCCGAGCG CCTGCCGCTG AGCTGCATCC AGGCACGCGG CTTCGACGAC
AAGGATGCGG TGCTGCCTGT TGTGCCGCGC GCCTTCCAGG GCTACCGCCT GTTGCAGGAG
TACTTCGCCC TGCCCAACCG CTTCCTGTTC GTCGAGTTCA GCGGTCTGCT GCGCGGCGTG
GCTCGTTGCG CGGCCCAGGA GCTGGAACTG GTGGTGCTGT TCAACCGCCT CGATACCAGC
CTGGAAGGCT CGGTATCGGC CGCGCAGTTC GTGCCCTTCT GCACCCCGGC GATCAACCTG
TTTCCCCGTC GCGCCGACCG CATCCACTTG AGCGATCACG TGCATGAATA TCAGGTCATC
GCCGACCGCA CCCGCCCGCT GGACTTCGAG GTGCACTCGC TGACCCAGGT CAGCGGCCAC
GGCAGCGGCC CCGAGCAACC CTTCCAGCCG TTCTACGCCA TCCGTGACCC GGCCCGCTAT
GGCCGCGAGC AGGCCTATTA CGTGGTGCGC CGCGAGGCAC GCCGGCTGTC CAGCCAGGCG
CGGCGGCGCG GGCCGCGTTC CACCTACGTG GGCAGCGAAA CCTTCGTTTC GCTGGTGGAC
GTCAACCAGG CGCCGTATCG ACATGACCTG CGCCAGCTGG GCATTGGCGC CCTGTGCACC
AACCGCGACC TGCCGCTGCT GATGCCGGTG GGCACCGGCA AGAGCGATTT CACCCTGGAG
GACAGCGCCC CGGTGCAGGC CGTTCGCTGC CTGGCCGGGC CCAGCCGCCC CCGCGCCAGC
CGCGCCCACG ATGCCAGCGC CTGGCGCCTG ATCAGCCAGC TGTCGCTCAA CTACCTGTCG
CTCAGCGAAC GCGGCCAGGG CGCTGCAGCC CTGCGCGAGT TGCTGCGCCT GTACGGCGAT
CCGTCCGATT CGGCGTTGCA GCTGCAAATC GAGGGCCTAC GCGAAGTGCG CAGCGCCCCC
TGCACGCGGC GTCTGCCGAT GCCGGGGCCG ATCGTCTTCG GTCGCGGCCT GGAGATCAGC
CTGGAGTTCG ACGAGAACGC CTTCCGCGGT ACCGGCGTGT ACCTGCTTGG CGCGGTGTTC
GAGCGTTTTC TCGCGCGCTA TGTGTCGATC AACAGCTTTA CCGAAACGGT GCTGCGCACC
ACCGAACGTG GAGAGATCAT GCGATGGCAG GCACAGCCGG GTCGCCGCCC GAACCTCTAG
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| Protein sequence | MNPRLLDYYN QELQHIRESA AEFAAEFPKI ASRLTLSGID CADPYVERLL EGFAYLTARV
HLKLDAEYPT FTHNLLEIAY PHYLAPTPSV TVVQLCADPD EGSLASGFRI ERGAALRGQL
GHEEQTACEY RTSHDVTLWP LEVSRAEYFG NPATALGRLA AAEPRAKAGL RIRLKCGAGM
PFKALALDSL PLFLAGADEQ PFRLYEQLLG NACALFIKSV DGEWAERLPL SCIQARGFDD
KDAVLPVVPR AFQGYRLLQE YFALPNRFLF VEFSGLLRGV ARCAAQELEL VVLFNRLDTS
LEGSVSAAQF VPFCTPAINL FPRRADRIHL SDHVHEYQVI ADRTRPLDFE VHSLTQVSGH
GSGPEQPFQP FYAIRDPARY GREQAYYVVR REARRLSSQA RRRGPRSTYV GSETFVSLVD
VNQAPYRHDL RQLGIGALCT NRDLPLLMPV GTGKSDFTLE DSAPVQAVRC LAGPSRPRAS
RAHDASAWRL ISQLSLNYLS LSERGQGAAA LRELLRLYGD PSDSALQLQI EGLREVRSAP
CTRRLPMPGP IVFGRGLEIS LEFDENAFRG TGVYLLGAVF ERFLARYVSI NSFTETVLRT
TERGEIMRWQ AQPGRRPNL
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