Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2317 |
Symbol | |
ID | 5108552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2557686 |
End bp | 2559047 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640503559 |
Product | hypothetical protein |
Protein accession | YP_001187807 |
Protein GI | 146307342 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0027894 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.000887894 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATCCGA TCGATGATCC GTTCGGCGGC CCGCCGGGCA ACGGTGGTGG TGGCTCAGGC CCTGGCAACG ACCGCACCAT GATCATGCCG CGCCCCGGCG GACGGGCGCC TGAGCCGCCC GCCGGCCAGC CCCGCCCCGC GCCTGCAGCC GGGCCGGCGC CGGCCATGCC TGGCGCGCCC CTGCCTAGCA GCCTGGCCCA GGGCCTCAAC CCGCTGGAGC GCGCAGCGGC GCCGCTGCTG GCGCTGCTGA CGCGTTTGCG CAACACCATT TCCCACCCGA TGCCGGCCAG CCTGCGCGCG CAATTGCTGG CCTATCTGCG TCAGTTCGAG GAACAGGCCA AGGGCGCCGG CGTGCCGCAG GACGAGGTCA TGCTCAGCCG CTACGTGCTG TGCACCGCGC TGGACGAGGC GGTGCTCAGC ACGCCCTGGG GCAGTGGCAG CGACTGGGGC AAGCAGAGCC TGCTGATCAC CCTGCACAAC GAGGCCTGGG GCGGTGAGAA GGTCTTCCAG CTACTCGAGC ACTGCCTGCA GAACGCCCGG CAGAAGCTGA ACATTCTCGA GCTGCTGTAC CTGTGCATGT GCCTGGGTTT CGAGGGGCGC TACCGGGTGA TGAACGACGG CCGCAGCCAG CTCGAAGCCC TGCGCGAACG CACCGCAGCG ACCATCCGCA GCGTCCGTGG CGAGTACGAA CGCGGTCTGT CGCCGCGCTG GCGGGGCGTC AGCGCGGTGC GCGATCGCCT GTCGCAGTTC GTCCCGCCCT GGGTCGGCAT CGCCGTATGC CTGGCGCTGC TGCTGCTTCT GCTGTTCGGC CTGCGCCTGA AGCTGGCCAG CGACGCCGAA CCGGTGTTCC GCAATATCCA CGCGTTGGGC GAGATCCCGG TGCAGACCAT CGACCGGCCG CCGGTACAGC CCAAGCTGAT CGAACGCCCG CGTCTGGCAC GTTTTCTCGA AGACGACATC CGCGCCCAGC GCGTCGCCGT GGAGGATGCG GTGGATCGTT CGGTGGTGAC CATCCGTGGC GACGAGCTGT TCGCTTCCGG CAGCGCCAGC ATTTCCGACA ACCTGCAGCC GCTGCTGCTG CGCATTGCCG AGGCCATCCG CCAGGTCAAG GGCAACGTGC TGGTCACCGG TCACAGTGAC GACCGGCCCA TCGCCACCTT GCGTTATCCC TCCAACTGGA AGCTGTCGCA GGACCGTGCG CAGCAGGTCA TGGACGTCCT GGCCGCGCGC AGCGGCCAGC CGGAACGCTT CACCGCCGAA GGGCGCAGCG ACACCGAACC GGTGGCCTCC AACGAGAGCG CCGCCGGCCG CGCACGCAAC CGCCGGGTGG AGATCACCGT ATTCGCGGAG GGCAACCTGT GA
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Protein sequence | MHPIDDPFGG PPGNGGGGSG PGNDRTMIMP RPGGRAPEPP AGQPRPAPAA GPAPAMPGAP LPSSLAQGLN PLERAAAPLL ALLTRLRNTI SHPMPASLRA QLLAYLRQFE EQAKGAGVPQ DEVMLSRYVL CTALDEAVLS TPWGSGSDWG KQSLLITLHN EAWGGEKVFQ LLEHCLQNAR QKLNILELLY LCMCLGFEGR YRVMNDGRSQ LEALRERTAA TIRSVRGEYE RGLSPRWRGV SAVRDRLSQF VPPWVGIAVC LALLLLLLFG LRLKLASDAE PVFRNIHALG EIPVQTIDRP PVQPKLIERP RLARFLEDDI RAQRVAVEDA VDRSVVTIRG DELFASGSAS ISDNLQPLLL RIAEAIRQVK GNVLVTGHSD DRPIATLRYP SNWKLSQDRA QQVMDVLAAR SGQPERFTAE GRSDTEPVAS NESAAGRARN RRVEITVFAE GNL
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