Gene Pmen_2295 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2295 
Symbol 
ID5108530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2532726 
End bp2534708 
Gene Length1983 bp 
Protein Length660 aa 
Translation table11 
GC content66% 
IMG OID640503537 
Productalpha amylase, catalytic region 
Protein accessionYP_001187785 
Protein GI146307320 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0369553 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000002386 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGCCCC CGCACTCCGT CGAGCAATCC CTTGCAATAG CCCTGAAGGA GCCCCGACTG 
GCACTGGAGG CGGTACAGCC GGTGGTCGAG CAGGGACGTT TCGCCGCCAA ATGCCTGTGC
GGACGTCCGC TGGTCGTCAG TGCCGTGATC TTCAGCGACG GCCATGACCA GTTGGCCGCC
GACCTGCTCT GGCGCAGCGC CGATCAGGCC AGCTGGCAAC GCGTGGCGAT GCAGCCACTA
GGCAACGATC ACTGGTCCGC CACCCTGCTG ATCGACGAGC AGGGCCGCGC CGAGTTCGCC
ATCGAAGCCT GGCTGGATGT CTATGCCAGC TTTCGTCAGG AACTGGTGAA GAAGCTCGGC
GCCGGCGTGC CGGTCGATCT CGAACTGCAG GAGGGCGCAC AGCTGGTACG CCGCATCTGC
GCCCAGGCTC CGGAGCACCT GCGTGGCGAA GTGGCTGCGC TGGTCGAGCG CGTGGAAGCC
GCGCAATCGC AGGAAGAGCG TGAGGCGGTG CTGATCGATC CTTCGGTCAA CGAGCTGATG
CGCCGCGCCG AGTACCGTCC GCACCTGCTG CGCAGCCGCA ACTACCCCCT GGATGTGGAG
CGCCGCCTGG CCGAGTTCGC CAGCTGGTAC GAGCTGTTCC CGCGCTCCCT GGGCGAGGAT
GGCAGTCACG GCACCTTCGC CGACGTCGAG AAGCGCATTC CCGAGATCGC CCGGATGGGC
TTCGACGTGC TGTATTTCCC GCCCATCCAC CCCATCGGTC GCACCCATCG CAAGGGGCCG
AACAACAGCC TGAAAGCCGG CCCGGACGAC CCTGGCAGCC CTTACGCCAT CGGCAGCGAG
GAGGGTGGCC ACGAGGCCCT GCACCCGCAG CTGGGCAGCC GTGAGGACTT CTGCCAGATG
GTCGAGGTGG CGCGCCAGCA TGGCCTGGAA GTGGCGCTGG ATTTCGCCGT GCAGTGCTCG
CCCGACCATC CCTGGCTCAA GCAGCACCCC GGCTGGTTCA GCTGGCGACC CGACGGCAGC
ATCCGTCACG CCGAGAACCC GCCGAAGAAG TACGAGGACA TCGTCAACGT CGAGTTCTAC
GCCGAGGCGG CCATGCCCGA TCTGTGGCTG GCCCTGCGCG ACGTGGTGCT GGGCTGGGTA
GCGCTGGGGG TGACCCTGTT TCGCGTGGAC AACCCGCACA CCAAACCCAT GCCGTTCTGG
GAATGGCTGA TCGCCGATGT GCGCGCTCGG CACCCGGAAG TGATCTTCCT CTCCGAGGCC
TTTACCCGTC CGGCGATGAT GGCGCGCCTG GGCAAGCTGG GCTTCAGCCA GAGCTACACC
TACTTCACCT GGCGCAACAC CAAGGCCGAG TTGCAGACCT ACTTCACCGA GCTGAACCAG
CCGCCATGGC GCGACTGCTA CCGGCCGAAC TTCTTCGTCA ACACGCCGGA CATCAACCCC
TATTTCTTGC AGCGCTGCGG CCGCCCCGGT TTTCTCATCC GCGCCGCGCT GGCCACCATG
GGCTCGGGGC TGTGGGGCAT GTACTCAGGC TTCGAGCTGT GCGAGGCCGA CCCGGTGCCG
GGCAAGGAGG AGTACTTTGA TTCGGAGAAG TACCAGCTGC GCCCGCGCGA CTACCACGCC
CCCGGCAACA TCAACGCCGA GATCGCCCGG CTCAACCAGA TCCGCCGCGA GAATCCCGCG
CTGCAGACCC ACCTGGGCTT CCAGGCCTAC ACGGTGTGGA ACGACAACAT CCTGTACTTC
GGCAAGCGTA CCGAGGACCG CAGCAACTTC ATCCTGGTGG CCATCAGCCT CGATCCCTTC
GCAGCCCAGG AGGCGCACTT CGAGCTGCCG CTGTGGGAGC TGGGCCTGCC TGACGACGCC
GACCTGCACG GCGAAGACCT GATGAACGGC CACCGCTGGA CCTGGCACGG CAAGGTGCAG
TGGATGCGTA TCGAACCCTG GCATCTGCCG TTCGGCATCT GGCGCATCCA GGCCGGCAAC
TGA
 
Protein sequence
MLPPHSVEQS LAIALKEPRL ALEAVQPVVE QGRFAAKCLC GRPLVVSAVI FSDGHDQLAA 
DLLWRSADQA SWQRVAMQPL GNDHWSATLL IDEQGRAEFA IEAWLDVYAS FRQELVKKLG
AGVPVDLELQ EGAQLVRRIC AQAPEHLRGE VAALVERVEA AQSQEEREAV LIDPSVNELM
RRAEYRPHLL RSRNYPLDVE RRLAEFASWY ELFPRSLGED GSHGTFADVE KRIPEIARMG
FDVLYFPPIH PIGRTHRKGP NNSLKAGPDD PGSPYAIGSE EGGHEALHPQ LGSREDFCQM
VEVARQHGLE VALDFAVQCS PDHPWLKQHP GWFSWRPDGS IRHAENPPKK YEDIVNVEFY
AEAAMPDLWL ALRDVVLGWV ALGVTLFRVD NPHTKPMPFW EWLIADVRAR HPEVIFLSEA
FTRPAMMARL GKLGFSQSYT YFTWRNTKAE LQTYFTELNQ PPWRDCYRPN FFVNTPDINP
YFLQRCGRPG FLIRAALATM GSGLWGMYSG FELCEADPVP GKEEYFDSEK YQLRPRDYHA
PGNINAEIAR LNQIRRENPA LQTHLGFQAY TVWNDNILYF GKRTEDRSNF ILVAISLDPF
AAQEAHFELP LWELGLPDDA DLHGEDLMNG HRWTWHGKVQ WMRIEPWHLP FGIWRIQAGN