Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2295 |
Symbol | |
ID | 5108530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2532726 |
End bp | 2534708 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640503537 |
Product | alpha amylase, catalytic region |
Protein accession | YP_001187785 |
Protein GI | 146307320 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0369553 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.000002386 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTGCCCC CGCACTCCGT CGAGCAATCC CTTGCAATAG CCCTGAAGGA GCCCCGACTG GCACTGGAGG CGGTACAGCC GGTGGTCGAG CAGGGACGTT TCGCCGCCAA ATGCCTGTGC GGACGTCCGC TGGTCGTCAG TGCCGTGATC TTCAGCGACG GCCATGACCA GTTGGCCGCC GACCTGCTCT GGCGCAGCGC CGATCAGGCC AGCTGGCAAC GCGTGGCGAT GCAGCCACTA GGCAACGATC ACTGGTCCGC CACCCTGCTG ATCGACGAGC AGGGCCGCGC CGAGTTCGCC ATCGAAGCCT GGCTGGATGT CTATGCCAGC TTTCGTCAGG AACTGGTGAA GAAGCTCGGC GCCGGCGTGC CGGTCGATCT CGAACTGCAG GAGGGCGCAC AGCTGGTACG CCGCATCTGC GCCCAGGCTC CGGAGCACCT GCGTGGCGAA GTGGCTGCGC TGGTCGAGCG CGTGGAAGCC GCGCAATCGC AGGAAGAGCG TGAGGCGGTG CTGATCGATC CTTCGGTCAA CGAGCTGATG CGCCGCGCCG AGTACCGTCC GCACCTGCTG CGCAGCCGCA ACTACCCCCT GGATGTGGAG CGCCGCCTGG CCGAGTTCGC CAGCTGGTAC GAGCTGTTCC CGCGCTCCCT GGGCGAGGAT GGCAGTCACG GCACCTTCGC CGACGTCGAG AAGCGCATTC CCGAGATCGC CCGGATGGGC TTCGACGTGC TGTATTTCCC GCCCATCCAC CCCATCGGTC GCACCCATCG CAAGGGGCCG AACAACAGCC TGAAAGCCGG CCCGGACGAC CCTGGCAGCC CTTACGCCAT CGGCAGCGAG GAGGGTGGCC ACGAGGCCCT GCACCCGCAG CTGGGCAGCC GTGAGGACTT CTGCCAGATG GTCGAGGTGG CGCGCCAGCA TGGCCTGGAA GTGGCGCTGG ATTTCGCCGT GCAGTGCTCG CCCGACCATC CCTGGCTCAA GCAGCACCCC GGCTGGTTCA GCTGGCGACC CGACGGCAGC ATCCGTCACG CCGAGAACCC GCCGAAGAAG TACGAGGACA TCGTCAACGT CGAGTTCTAC GCCGAGGCGG CCATGCCCGA TCTGTGGCTG GCCCTGCGCG ACGTGGTGCT GGGCTGGGTA GCGCTGGGGG TGACCCTGTT TCGCGTGGAC AACCCGCACA CCAAACCCAT GCCGTTCTGG GAATGGCTGA TCGCCGATGT GCGCGCTCGG CACCCGGAAG TGATCTTCCT CTCCGAGGCC TTTACCCGTC CGGCGATGAT GGCGCGCCTG GGCAAGCTGG GCTTCAGCCA GAGCTACACC TACTTCACCT GGCGCAACAC CAAGGCCGAG TTGCAGACCT ACTTCACCGA GCTGAACCAG CCGCCATGGC GCGACTGCTA CCGGCCGAAC TTCTTCGTCA ACACGCCGGA CATCAACCCC TATTTCTTGC AGCGCTGCGG CCGCCCCGGT TTTCTCATCC GCGCCGCGCT GGCCACCATG GGCTCGGGGC TGTGGGGCAT GTACTCAGGC TTCGAGCTGT GCGAGGCCGA CCCGGTGCCG GGCAAGGAGG AGTACTTTGA TTCGGAGAAG TACCAGCTGC GCCCGCGCGA CTACCACGCC CCCGGCAACA TCAACGCCGA GATCGCCCGG CTCAACCAGA TCCGCCGCGA GAATCCCGCG CTGCAGACCC ACCTGGGCTT CCAGGCCTAC ACGGTGTGGA ACGACAACAT CCTGTACTTC GGCAAGCGTA CCGAGGACCG CAGCAACTTC ATCCTGGTGG CCATCAGCCT CGATCCCTTC GCAGCCCAGG AGGCGCACTT CGAGCTGCCG CTGTGGGAGC TGGGCCTGCC TGACGACGCC GACCTGCACG GCGAAGACCT GATGAACGGC CACCGCTGGA CCTGGCACGG CAAGGTGCAG TGGATGCGTA TCGAACCCTG GCATCTGCCG TTCGGCATCT GGCGCATCCA GGCCGGCAAC TGA
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Protein sequence | MLPPHSVEQS LAIALKEPRL ALEAVQPVVE QGRFAAKCLC GRPLVVSAVI FSDGHDQLAA DLLWRSADQA SWQRVAMQPL GNDHWSATLL IDEQGRAEFA IEAWLDVYAS FRQELVKKLG AGVPVDLELQ EGAQLVRRIC AQAPEHLRGE VAALVERVEA AQSQEEREAV LIDPSVNELM RRAEYRPHLL RSRNYPLDVE RRLAEFASWY ELFPRSLGED GSHGTFADVE KRIPEIARMG FDVLYFPPIH PIGRTHRKGP NNSLKAGPDD PGSPYAIGSE EGGHEALHPQ LGSREDFCQM VEVARQHGLE VALDFAVQCS PDHPWLKQHP GWFSWRPDGS IRHAENPPKK YEDIVNVEFY AEAAMPDLWL ALRDVVLGWV ALGVTLFRVD NPHTKPMPFW EWLIADVRAR HPEVIFLSEA FTRPAMMARL GKLGFSQSYT YFTWRNTKAE LQTYFTELNQ PPWRDCYRPN FFVNTPDINP YFLQRCGRPG FLIRAALATM GSGLWGMYSG FELCEADPVP GKEEYFDSEK YQLRPRDYHA PGNINAEIAR LNQIRRENPA LQTHLGFQAY TVWNDNILYF GKRTEDRSNF ILVAISLDPF AAQEAHFELP LWELGLPDDA DLHGEDLMNG HRWTWHGKVQ WMRIEPWHLP FGIWRIQAGN
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