| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2282 |
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| Symbol | |
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| ID | 5108517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2514636 |
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| End bp | 2516750 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503524 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001187772 |
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| Protein GI | 146307307 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0218366 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.000957469 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCAAGC AACAGCGCTC TCGCGTGACC GAGGGCAGTC CGTTTCCATT GGGCGCCACC
TGGGATGGCC TGGGAGTCAA CTTCGCGCTG TTCTCGGCCC ACGCCACCCG CGTGGAGTTG
TGCCTGTTCG ACGAGCGCGG CGAAACGGAG ATCGAGCGCA TCGAACTGCC CGAGTACACC
GACGAGATCT GGCACGGCTA CCTGCCCGAC GCGCGTCCCG GCCAGGTCTA CGGCTACCGC
GTATACGGCC CGTACGAGCC GGATGCCGGG CACCGCTTCA ACCCCAACAA GCTTCTGATC
GACCCCTATG CCAAGCAGCT GGTGGGCAAG CTGCAATGGT CGGAGGCCCT GTTCGGCTAC
ACCATCGGCG ATCCGGACGG CGACCTGAGC TTCGACGAGC GCGACAGCGC CCCCTTCGTG
CCCAAGAGCA AGGTGATCGA CCCGGCCTTC ACCTGGGGCG AGCAGCCGCG CATCCGCGTG
CCATGGGAAC ACACGGTCAT CTACGAGGCG CACCTGCGCG GCATCAGCAT GCGCCATCCG
GCGGTGCCGG ACCGGCACCG CGGCAGCTGC GCCGGCCTGA CCAACCCCGA GCTGCTGCGG
CACATCCGCG AGCTGGGCGT CTCCAGCGTG GAACTGCTGC CGGTGCATGC CTTCGTCAAT
GACCAGCACC TGCTGGAAAA GGGCATGAAC AACTACTGGG GCTACAACAG CATCGGCTTT
TTCGCGCCCC ACCCCGCCTA CCTCGCCAGC GGCCGCATCA GCGAGTTCAA GGAGATGGTC
GCGCACCTGC ACGATGCCGG CCTGGAGCTG ATTCTCGACG TGGTCTACAA CCACACTGCC
GAGGGCAACG AGCGCGGCCC TACGCTCAGC ATGCGCGGCA TCGACAACGC CAGCTACTAC
CGCCTGATGC CGGACGAGCG GCGCTACTAC ATCAACGATT CGGGCACCGG CAACACCCTC
GATCTCAGTC ACCCCTGCGT GCTGCAGATG GTCACCGACT CGCTGCGCTA CTGGGCCACC
GAGATGCGCG TGGACGGTTT TCGCTTCGAC CTGGCGACCA TTCTCGGCCG CCATGCGCAC
GGCTTCGACG AGCGCCACGG CTTTCTCGTC GCCTGCCGTC AGGACCCGGT GCTGAGCAAG
GTCAAGCTGA TCGCCGAGCC CTGGGACTGC GGCCCGGGTG GCTATCAGGT CGGCGGCTTC
CCGCCCGGCT GGGCGGAGTG GAACGACAAG TTCCGCGACA ACGTGCGCGC CTTCTGGAAA
GGCGACCGCG GCGAACTGGC GGAACTGGCC AGCCGCCTCA CCGCCTCGGG CGATCTGTAC
AACCAGCGCG GCCGTCGCCC CTTCGCCTCG GTCAACTTCA TCACCGCGCA TGACGGCTTC
ACCCTGCGCG ACGTGGTGTC CTACGACCAC AAGCACAACG AGGCCAACGA CGAGAACAAC
CAGGACGGCA CCGACCGCAA CCTGTCGTGG AACCACGGTT GCGAGGGCGC CACCGACGAT
CCCGCGATCC GCAGCCTGCG CGTGCAGCAG ATGCGCAACA TGCTGGCCAC CCTGCTGTTC
GCCCAGGGCA CGCCGATGCT GGTGGCCGGC GACGAGTTCG GCCGCACCCA GCACGGCAAC
AACAATGCCT ACTGCCAGGA CAACGAACTG AGCTGGGTGG ACTGGTCGCT GGACGACGAG
GGCCGGGAGC TGGTGGCCTT CTGTCAGCGT CTGATCGCCC TGCGCCATAC CTATCCAATC
CTGCGTCGGC AGCGCTTTCT GGTCGGTCAT TACAACGAGG AGATCGACGT CAAGGACGTG
ACCTGGCTGG CTCCGGGTGG CGAGGAAATG ACCGAGGAGC ACTGGCACGA CGAAGAGGCG
CGCTGCATGG GCATGCTCAT GGACGGCCGA GCGCAGCCTT CGGGGGTCAA GCGCAGCGGC
GCCGATGCCA CCTTGCTGCT GCTGGTCAAC GCCGGCCACG AGCCCTGCAA CTTCCAGTTG
CCGGATGTCT ACGGCGGCCG TCACTGGCTG TGCCTGGTCG ATACCCACAC CGCGCAAACC
GATCCGGCGC CGGTGCAGCA GCAGGTGGTC GAACTGGCCG GCCGCTCGCT GCAGCTGCTG
GAGCTGCTGC GCTGA
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| Protein sequence | MRKQQRSRVT EGSPFPLGAT WDGLGVNFAL FSAHATRVEL CLFDERGETE IERIELPEYT
DEIWHGYLPD ARPGQVYGYR VYGPYEPDAG HRFNPNKLLI DPYAKQLVGK LQWSEALFGY
TIGDPDGDLS FDERDSAPFV PKSKVIDPAF TWGEQPRIRV PWEHTVIYEA HLRGISMRHP
AVPDRHRGSC AGLTNPELLR HIRELGVSSV ELLPVHAFVN DQHLLEKGMN NYWGYNSIGF
FAPHPAYLAS GRISEFKEMV AHLHDAGLEL ILDVVYNHTA EGNERGPTLS MRGIDNASYY
RLMPDERRYY INDSGTGNTL DLSHPCVLQM VTDSLRYWAT EMRVDGFRFD LATILGRHAH
GFDERHGFLV ACRQDPVLSK VKLIAEPWDC GPGGYQVGGF PPGWAEWNDK FRDNVRAFWK
GDRGELAELA SRLTASGDLY NQRGRRPFAS VNFITAHDGF TLRDVVSYDH KHNEANDENN
QDGTDRNLSW NHGCEGATDD PAIRSLRVQQ MRNMLATLLF AQGTPMLVAG DEFGRTQHGN
NNAYCQDNEL SWVDWSLDDE GRELVAFCQR LIALRHTYPI LRRQRFLVGH YNEEIDVKDV
TWLAPGGEEM TEEHWHDEEA RCMGMLMDGR AQPSGVKRSG ADATLLLLVN AGHEPCNFQL
PDVYGGRHWL CLVDTHTAQT DPAPVQQQVV ELAGRSLQLL ELLR
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