| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2279 |
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| Symbol | |
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| ID | 5108514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2509548 |
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| End bp | 2511602 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640503521 |
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| Product | 4-alpha-glucanotransferase |
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| Protein accession | YP_001187769 |
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| Protein GI | 146307304 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1640] 4-alpha-glucanotransferase |
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| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0480824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0112086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATA CGCTATTGGC CGAACTGGCC GAGGCGGCCG GTCTGTACAT CGACTGGACG
GATGCCCACG GCCGGCCGCA AACCGTTACC CCGGAGGCGC AGCGCGCCCT GCTGGAAGCG
CTGGGGTACC CGGCGCAGAG CCCCGAACAG ATACGTTCGA GCCTGGCGAT GCTGACGCAG
CAGCAACACG TACCCTCGCC CGATGCCCTG TTGCTGCAGG ATCAGGGTCA GCCCCTGCCC
CTGGCGCTCT ACCCGGCCGA CAGCCCCTAC CGGCTGATCG ACGAACAGGG CCAGGTCTTC
AGCGGCCGCC TCGACGCCGA CGCCCGCCTG CCGGCGCAGC CGCAGCCCGG CTATTACCAG
CTGGAGATCC GCGATACCCG TCACGCGCTG GCGGTCACCC CGGCGGCGTG CCTGTCGGTG
TCGCAGCTGT GCGGCAAACC GCGCATCTGG GGGCTCACCG CACAGCTTTA CGGGCTGCGC
CGCCCAGGCG ATGGCGGCGT CGGCGACACC CAGGCAGTGG CCGAGCTGCT GCGGCATGCC
GCCAACCAGG GCGCCGATGC CCTGGCACTG AGCCCGGTAC ACGCGCTGTT CGCTGCCGAC
ACCGAGCGTT TCGGCCCCTA CTCGCCGTCC AGTCGTCTGT TCTTCAACCC CCTGCATGCG
GCGCCTGCCG ACCGCCTGGG TGAAGAACGG GTGCAGCGCG CCATTCAGAC GGCCGGTCTG
CAGGAAGAAA TGCAACGTCT GGAACACCTG GAGCTGATCG ACTGGCCCGC CGTGGCCAAG
GCGCGGCAGC GCCTGCTGTG GCAGCTGTAT CAGGACTTTT GCCAGGCCCC GGGCGATCTG
CTCGCCGATT TCGAGGCCTT CCGCGCAGCA GGCGGCGACG CCCTGCAGCA GCATTGCTGT
TTCGAGGCCA TTCATGCGCA GCGCCTGCGC GAAGGGGCCA GCGGCGACTG GCGCAGCTGG
CCGCAGGAAC TGCGCAACCC GCTCCAGGGC GCCGTCACCC GCTTCGCCGC GGAACAGGCC
GATACGCTGA GGTTTCACGC CTTCGCCCAG TGGCTGATCG CCCATGGCCT GGAATGCGCC
CAGGCCACGG CCAGCGGTGC GGGCATGGGC ATCGGCCTGA TCGCCGATCT GGCCGTGGGC
GCCGATTGCG CGGGCAGCCA GGCCTGGTCA CGCCAGGACG AACTGCTGCC TTCGGTCACC
GTCGGTGCGC CGCCGGACAT CATCAATCGC CAGGGGCAGA ACTGGGGCGT CGCCGCGTTC
TCGCCGCAGG GGCTGCAACG GCACGGCTTT CGCGCCTACA TCGAAATGCT GCAGGCCAAT
CTGGCGCACG CCGGCGGTAT CCGCATCGAC CACGTGATGG GGCTGCAGCG CCTGTGGGTG
ATCCCGCAGG GCGGCGAGGC GCAGCACGGC GCCTACCTGC GCTATCCGCT GGACGACCTG
CTGCGCCTGT TGGCGCTGGA GTCGCACCGC CACCGCGCCC TGGTCATAGG CGAGGACCTG
GGCACCGTCC CCGACGGGCT GCGCGAGAAG CTGGCGGCGC GCAACATACT CGGCACCCGC
GTGCTGCTGT TCGAACAGCA GGACGGGCGC TTCATCCCCC CGGCACAGTG GTCGCGCAAT
GCCCTGGCGA CCACCACCAC GCACGATTTG CCGACCATCA AGGGCTGGTT CGCCGGCCAC
GACATCGAAT GGCGGGTGCG CGCCGGGCAC GCCGACGAGC AGAGCCTGGA GCAGGACCAT
GCCGAGCGGG CCGGCGAACG GGTGGCGCTG CTGCAGGCGC TGGAACAGCG CGGCCCGCTC
GGCGGCACCG ATGATGACGC CTGCCTGCAG GCCTGCATCG ACTACATCGG CAGCACGCCC
TCGGCGCTCG CCCTGCTGCC GCTGGAAGAC GCCTGCGCGC TGGAGCAGCA GCCCAACCTG
CCCGGCCCCG GCGACCTGCA CCCCAACTGG CGACGGCGCT ACCCGCTGGC GGCCAACGAA
CTGCTGGAAC AGCCGGCGAC CCGCCGCCGT CTGGCCTGTC TGGATACGGC ACGCCGGGAG
GCAGGCGATG AGTGA
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| Protein sequence | MSDTLLAELA EAAGLYIDWT DAHGRPQTVT PEAQRALLEA LGYPAQSPEQ IRSSLAMLTQ
QQHVPSPDAL LLQDQGQPLP LALYPADSPY RLIDEQGQVF SGRLDADARL PAQPQPGYYQ
LEIRDTRHAL AVTPAACLSV SQLCGKPRIW GLTAQLYGLR RPGDGGVGDT QAVAELLRHA
ANQGADALAL SPVHALFAAD TERFGPYSPS SRLFFNPLHA APADRLGEER VQRAIQTAGL
QEEMQRLEHL ELIDWPAVAK ARQRLLWQLY QDFCQAPGDL LADFEAFRAA GGDALQQHCC
FEAIHAQRLR EGASGDWRSW PQELRNPLQG AVTRFAAEQA DTLRFHAFAQ WLIAHGLECA
QATASGAGMG IGLIADLAVG ADCAGSQAWS RQDELLPSVT VGAPPDIINR QGQNWGVAAF
SPQGLQRHGF RAYIEMLQAN LAHAGGIRID HVMGLQRLWV IPQGGEAQHG AYLRYPLDDL
LRLLALESHR HRALVIGEDL GTVPDGLREK LAARNILGTR VLLFEQQDGR FIPPAQWSRN
ALATTTTHDL PTIKGWFAGH DIEWRVRAGH ADEQSLEQDH AERAGERVAL LQALEQRGPL
GGTDDDACLQ ACIDYIGSTP SALALLPLED ACALEQQPNL PGPGDLHPNW RRRYPLAANE
LLEQPATRRR LACLDTARRE AGDE
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