| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2278 |
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| Symbol | |
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| ID | 5108513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2507797 |
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| End bp | 2509551 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503520 |
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| Product | malto-oligosyltrehalose trehalohydrolase |
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| Protein accession | YP_001187768 |
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| Protein GI | 146307303 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0380817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.00913073 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACAGCC ATGGCGCCCG GCCGATGGCC GACGGACGTA CACGTTTCGC ACTCTGGGCT
CCCAGTTGCC GGCGCGTGGA CCTGCAACTG CTGGACGGCA GTCAGCACCG GCTGACGCCC
CAGGACGACG GCTGGTTCGT GCTGCTGCTC GATTGCCCAG CGGAAGCCAG TTACCGCTAC
CTGATCGACG AACAATGGAC GGTGCCGGAC CCCGCCTCGC GACGGCAGGT GGACGATGTG
CACGGTTTCA GCCAGGTGGT GGACCCGCAG CGCTATGAAT GGCGCCATTG CGACTGGCAC
GGCCGGCCCT GGCACGAGGC GGTGATCTAC GAGCTGCACG TCGGCCTGTT CGGGGGCTTC
CAGCAGGTCG AGGAACATCT GCCGCACCTG GTCGACCTGG GTGTCACGGC GCTGCAGCTG
ATGCCGCTCG CCGCCTTCTC CGGCCGGCGC AACTGGGGTT ACGACGGGGT GCTGCCCTTC
GCGCCGGCGA GCTGCTACGG CACGCCGGAT GAACTCAGGC GCCTGGTCGA TACCGCCCAC
GCCTTCGGCC TGATGGTCTT CGTCGACGTG GTCTACAACC ACTTCGGCCC GGACGGCAAT
TACCTGGGGC TGTACGCCCG CCAGTTCTTC CACGAGGAGC GTGCCACCCC CTGGGGCGCT
GCCATCGATT TCGGCCGGCC GCAGGTACGC GATTTCTTCT GCGAGAACGC CCTGATGTGG
CTGCTCGACT ATCGCATCGA CGGCCTGCGT CTGGACGCGG TACACGCCAT CGACGACGAC
GGCTTTCTCC GCGAGCTGGT CTCGCGCGTG CGCGCCGCGG TACCGGCGCA GCGCCACGTG
CACCTGGTGC TGGAGAACGA GAACAACGCC GCGCATCTGC TGCGCGACGG TTTCGATGCG
CAGTGGAACG ACGACGGCCA CAACACCCTG CACGTGCTGC TCACCGGCGA GGACGAGAGC
TACTACGCCG ACTACGCCCA GGCGCCGACG CGCAAGCTGG CCACCTGTCT GGAGCAGGGT
TTCGTCTACC AGGGCCAGGC CAATCGCCAC GGCCGCCCGC GTGGCGAGCC CAGCGCCGAC
CTGCCGCCGC ATGCCTTCGT GCTGTTTCTG CAAAACCACG ACCAAGTCGG CAACCGCGCC
TTCGGCGAAC GCCTGGCGCT GCTGGCCGAG CCCGATGCGC TGAAGGCGGC CACCGTGCTG
CTGCTGCTCT GCCCCATGGT GCCGCTGCTG TTCATGGGCG AGGAATGGGG CTGCACGAGG
CCGTTCCTGT TCTTCACCGA CTATCACGAC GAGCTGGCCA ATGCGGTGCG CGAGGGCCGG
CGCAACGAGT TCGCCGAATT CTCCCGCTTC AGCGACGCCC ATAGCCGCGA GACCATCGCC
GATCCCAACG CGCTGGCCAG CTTCCTGCGT TCGCAGCCGG ATCTGGCACC GGCGCTGGAG
CCGCAGCAGC GCGACTGGCT GGCCTTCTAC CGCGGTCTGC TGCAGGTGCG CCGCACGCGT
CTGCAGCCGG GTCTGCAGGA GGCTCGCAGC CTCGGCGCAG AGGTACTGGG CGACGCGGCC
GTGCTGGCGC GCTGGCGGCT CGGCAACGGG CCGACGCTGA GCATCGCGCT GAACCTGGGT
ACGGGGGCGG TGCATCTGCC GACCCCGAGC GCGCAGGCCG AGCGGCTGTA CACCTACCGC
ATCGAGGATG CCGACCTACG TCAGGAGCAA CTGCCGGCGC GCAGTGCCCT GGTCACCCTG
GAGCCCGTGC AATGA
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| Protein sequence | MYSHGARPMA DGRTRFALWA PSCRRVDLQL LDGSQHRLTP QDDGWFVLLL DCPAEASYRY
LIDEQWTVPD PASRRQVDDV HGFSQVVDPQ RYEWRHCDWH GRPWHEAVIY ELHVGLFGGF
QQVEEHLPHL VDLGVTALQL MPLAAFSGRR NWGYDGVLPF APASCYGTPD ELRRLVDTAH
AFGLMVFVDV VYNHFGPDGN YLGLYARQFF HEERATPWGA AIDFGRPQVR DFFCENALMW
LLDYRIDGLR LDAVHAIDDD GFLRELVSRV RAAVPAQRHV HLVLENENNA AHLLRDGFDA
QWNDDGHNTL HVLLTGEDES YYADYAQAPT RKLATCLEQG FVYQGQANRH GRPRGEPSAD
LPPHAFVLFL QNHDQVGNRA FGERLALLAE PDALKAATVL LLLCPMVPLL FMGEEWGCTR
PFLFFTDYHD ELANAVREGR RNEFAEFSRF SDAHSRETIA DPNALASFLR SQPDLAPALE
PQQRDWLAFY RGLLQVRRTR LQPGLQEARS LGAEVLGDAA VLARWRLGNG PTLSIALNLG
TGAVHLPTPS AQAERLYTYR IEDADLRQEQ LPARSALVTL EPVQ
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