| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2267 |
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| Symbol | |
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| ID | 5109210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2495607 |
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| End bp | 2498138 |
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| Gene Length | 2532 bp |
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| Protein Length | 843 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503509 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_001187757 |
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| Protein GI | 146307292 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0715373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.007718 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAGCAAAC AGAGCAGTGA CAACAACGTC GATACGAACG ACCTGCACGA CCAGTTCGAC
GACGTGTGGG GCAACCCGCG CGGCTGGAAG TCCCTGACCA TCGTCAACCA CACCACGGTC
GGCATCCGCT TCATGCTCAC CGGGCTGGGC TTCTTCCTGT TCGGCGGGCT GCTGGCGATG
CTGGTGCGCA CACAACTGGC GCTGCCGGGT TACGACTTCC TCGAGCCGGA CATGTACAAC
CAGATCTTCA CCATGCACGG CACGGTGATG ATGTTCCTGT TCGCCGTGCC GATGATGGAA
GGCCTGGCGG TCTACCTGAT TCCGAAGATG CTCGGCGCGC GCGACCTGGT GTTCCCGCGC
CTGTCGGCGC TGGGCTACTG GTGCTACCTG TTCGGTGGGC TGATCCTGTG TGCCAGCCTG
CTGCTGGGCA TCGCGCCCAA GGCCGGCTGG TTCATGTACA CGCCGCTGTC CAGCGCGGTA
CACACACCGG GGCCGAACTC GGACTTCTGG CTGATCGGCA TCACCTTCGT GGAAATCTCC
GCGGTCTCGG CCGGGGTGGA ACTGGTGGTA TCGATCCTGC GCACCCGCGC CGAAGGCATG
GCACTGCACA AGATGCCGAT CTACGCCTGG TACATCCTGG TGATGGCAAT GATGATCGTG
GTCGGCTTTC CGCCACTGAT CCTCGGCAGC ATCCTGCTGG AACTGGAGCG CGCCGCCGGC
CTGCCGTTCT TCGAGGTGGC CCGCGGTGGC GACCCGATCC TCTGGCAGCA TCTGTTCTGG
CTGTTCGGCC ACCCCGAGGT GTACATCATC TTCCTGCCCG CCGCCGGTAT CGTCTCGACC
CTGCTGCCAG TGTTCTGCCA GCGTCCGCTG GCGGGCTATC GCTGGGTGGT CCTGGCCATT
CTCACCACCG GCTTCATCAG CTTCGGCCTG TGGGTGCACC ACATGTTCAC CGTGGGCATC
CCGCAACTGG CGCAGGCGTT CTTCTCCGCG GCGAGCATGC TGGTGGCGAT ACCCACCGGC
GTTCAGGTGT TCGCCTGGAT CGCCACGCTG TGGCTGGGGC GCCCGGTGTA CCACGTGCCG
ATGCTGTGGC TGGTGGGCTT TCTGGTGATC TTCGTCTGTG GCGGCCTGAC CGGGGTGATG
CTGGCTCTGG TGCCCTTCGA CTGGCAGGTG CACGACACCC ATTTCGTGGT GGCGCACATG
CACTACGTGC TGGTGGGCGG CATGTTCTTC CCGCTGCTGG CCGGCATCTA TTACTGGCTG
CCGCATTTTT CCGGGCGCAT GCCCTCCATG CGCCTGGGCA AATGGGGCTT CTGGCTGGTG
TTCATCGGCT TCAACGTTAC CTTCCTGATC ATGCACTGGA CCGGGCTGAT GGGCATGCCG
CGGCGCATCT ACACCTACCA GACCGGCCTG GGCTGGGACC TGCCCAATCT GATCTCCTCG
GTGGGCAGCT TCATCATGGC CATCGGTATC GCCACCGTGC TGCTGGACAT CGTCCTGCAT
TTTCGTTTCG GCCAGCCGGC GGGCAACAAC CCGTGGAAGG CCGATACCCT GGAATGGAGT
ACCCACCTGC CGCCGAGCCC CTACAACTTC GTCAGCCTGC CGCCGGTGCG CACCCGCCAC
CCGCTGTGGG AGGAGCCCGA TCTGGGCGAG CGCATCGACC GTGGCGATTT CGCGCTGACG
GTGATCGACC ACGGCCGTAG GGAAACCTGG GGCGTCGAGC CGCTGACCGG CAAGGTGCGC
GAGATTGTCC ATCTGCCCGG CAACAGCTGG CTGCCCTTCA TCGCCGCCGC GTTCATCGCC
TTCACCTGCC TGGGTCTGCT GAGCAAGCAC TACTGGGTTG CGCTCGCTGC CAGCCTCGTC
GCGGTGCTGG CCCTGCTGCG CTGGAGCTGG GAGAACGGCG CGCATCCCCT GGCGGCACCG
GACGCGCGGG TACAGCCGGG CGAGCCGCCG CTGCATTCAC GCACCTGCGA TGGTCCCGGG
CTGTGGGGCA TGGGCGTCAC CTTGCTGGCC AACGGTGCGC TGTACCTGTC GCTGCTGTTT
GGCTGGTTCT ACCTGTGGAC GGTATCGCCG AACTGGCAGG TGCCGGACGC GCCGGTGCTC
GACCAGCGCG TGCTGCTGGC CAGCGCCCTG GCGCTGACTG CCGCGGTGCT CTGGCAACGG
CCGGTGCTGC GTAGGCTGCG CCGTGGCGAG GGCGAGCCTT CTGCCCTGCT CACCTGCTTC
GCCGGTGTCG CCACGCTGGG GCTGCTGCAT GCGGCGCTGC TGCTGTGGGC GATACTCGGC
GGCGATCTCG CGCCGCGTGC CACGGCGCAT GACGCCGTGG TTCTGGTGAT GCTCGGTTAC
AGCCTGCTGC ATGGCGTGCT GGCGGCCGTG CTCAGCGGTC TGCAGGCGCT GCGCGTGCAT
TACGGCTATG TGTGCGCCAA GACGCCCTAC GAGCCGCTGG TGGTCGAGCA GCTGTGGCAA
TACAACCTGG CGGTGCTGTG GATCAGCTAC TTCTGCCTCG TCCTGTTTCC CCCCACCTTT
GGAGGCCTGT GA
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| Protein sequence | MSKQSSDNNV DTNDLHDQFD DVWGNPRGWK SLTIVNHTTV GIRFMLTGLG FFLFGGLLAM
LVRTQLALPG YDFLEPDMYN QIFTMHGTVM MFLFAVPMME GLAVYLIPKM LGARDLVFPR
LSALGYWCYL FGGLILCASL LLGIAPKAGW FMYTPLSSAV HTPGPNSDFW LIGITFVEIS
AVSAGVELVV SILRTRAEGM ALHKMPIYAW YILVMAMMIV VGFPPLILGS ILLELERAAG
LPFFEVARGG DPILWQHLFW LFGHPEVYII FLPAAGIVST LLPVFCQRPL AGYRWVVLAI
LTTGFISFGL WVHHMFTVGI PQLAQAFFSA ASMLVAIPTG VQVFAWIATL WLGRPVYHVP
MLWLVGFLVI FVCGGLTGVM LALVPFDWQV HDTHFVVAHM HYVLVGGMFF PLLAGIYYWL
PHFSGRMPSM RLGKWGFWLV FIGFNVTFLI MHWTGLMGMP RRIYTYQTGL GWDLPNLISS
VGSFIMAIGI ATVLLDIVLH FRFGQPAGNN PWKADTLEWS THLPPSPYNF VSLPPVRTRH
PLWEEPDLGE RIDRGDFALT VIDHGRRETW GVEPLTGKVR EIVHLPGNSW LPFIAAAFIA
FTCLGLLSKH YWVALAASLV AVLALLRWSW ENGAHPLAAP DARVQPGEPP LHSRTCDGPG
LWGMGVTLLA NGALYLSLLF GWFYLWTVSP NWQVPDAPVL DQRVLLASAL ALTAAVLWQR
PVLRRLRRGE GEPSALLTCF AGVATLGLLH AALLLWAILG GDLAPRATAH DAVVLVMLGY
SLLHGVLAAV LSGLQALRVH YGYVCAKTPY EPLVVEQLWQ YNLAVLWISY FCLVLFPPTF
GGL
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